BtaINT0164956 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040603 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr18:57904190-57904802:+
Coord C1 exon
chr18:57904190-57904316
Coord A exon
chr18:57904317-57904706
Coord C2 exon
chr18:57904707-57904802
Length
390 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATATCCTTTCTTATTCACAGGGT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGGTTAGTGTCTTTTGAGGATGTGACCATGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGACACCTGTATCAGGATGTGATGCTGGAGATCTACAGCCACTTTTTCTCTGTGG
Seq A exon
GTGAGCACAGCTGACCTGGGACTCTTGGACGGGCCTCCGAGATGTCCCTCCTTCTTGTGGCATGCAGTGGGACATCTGAAGAATGTAATCAGTTTGTCCTGGGCTTGTCCCAAATTGTTCATTCCTCTTGGTCATCTTTGAATGTTACTTTGTTCCTAATGAAAGATGTGTCAATGAAAGAAAGCTTCATTGAATGACCTCTGAAGCCCAATGTATGTCTTGCACGCTAAGTCACTTCAGTTGTGTCCGACTCTTTTTGACCCCATGAACTATAGCCAATCAGGCTCCTTTGTACATGGGATTCTCCAGGCAGAATACTAGAGTGGGTTCCCATGCCCTTCTCTGAAGCCCAATACCACATCCTAATGCAATATCCTTTCTTATTCACAG
Seq C2 exon
GGTATCACATTCCCAACCCAGAGATCATTTTCAGGATTGAAGAAGGAAAGGAACCATGGGTGAGGAAGACTGAACTCCCATGTCAGAGGTATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040603:ENSBTAT00000052898:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTAGTGTCTTTTGAGGATGTGA
R:
CATGATACCTCTGACATGGGAGT
Band lengths:
223-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development