MmuINT0179672 @ mm10
Intron Retention
Gene
ENSMUSG00000056592 | Zfp658
Description
zinc finger protein 658 [Source:MGI Symbol;Acc:MGI:2652821]
Coordinates
chr7:43567268-43567743:+
Coord C1 exon
chr7:43567268-43567394
Coord A exon
chr7:43567395-43567644
Coord C2 exon
chr7:43567645-43567743
Length
250 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AGATATTCTTCCAACTACAGGCT
3' ss Score
5.16
Exon sequences
Seq C1 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCGACGCCTGGACTCCGTCCAGAGACACCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
Seq A exon
GTGAGCATGGCTGGCCCGGGGATACAGGATGGGCTTCGTTGAAAATATTTCCTCCTTCTTTTGCTAGAACATGGCGGGATATCAAAAGTGGGACATGGTTTTCCCCCATGCTTTGTCCCAATTACTTTTTGACACTCCGAGTTAATTACTCTGTGCCCAGTACAAGATATTAATTTTCCAATCAGCCAGTACAAAGCTTATTGGATGACCTCTAAAGCTACACACTAAGCAGATATTCTTCCAACTACAG
Seq C2 exon
GCTACCCTGTTCCTAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGGAGGCACGGACAGGAGAGGCCAAGCTCCCACATCCTTGTTGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056592:ENSMUST00000107972:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAGGATGTGACTGTGGA
R:
CTTGACACCAACAAGGATGTGG
Band lengths:
216-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types