BtaEX0041116 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040603 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr18:57902533-57904802:+
Coord C1 exon
chr18:57902533-57902794
Coord A exon
chr18:57904190-57904316
Coord C2 exon
chr18:57904707-57904802
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTGGGGTATGTTGTTATAGGGG
3' ss Score
4.06
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GATTTCTAGTGTCCCTCCAGAGCCCCTGGGTCAGGCCACATCACGGAGACTGCAGGATCTCCCTACACAGCTCAGGTCGACTCTTCCTAGCAGCTCTGATTGGAGCCTTCTGATGCCCACCCAGCTGCAGGCTCCTGGAAAGAGTGTTGTTGTCAGCAAGAGAGACCAAGAATTGAAGCCCAGAAGGGACATGCTTGCTGACATGAATTTGCCCCAGAGGCCCCAGGTCTTGGGTTTAGAGGAGCAGGATGTATCGTGTGAG
Seq A exon
GGGTTAGTGTCTTTTGAGGATGTGACCATGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGACACCTGTATCAGGATGTGATGCTGGAGATCTACAGCCACTTTTTCTCTGTGG
Seq C2 exon
GGTATCACATTCCCAACCCAGAGATCATTTTCAGGATTGAAGAAGGAAAGGAACCATGGGTGAGGAAGACTGAACTCCCATGTCAGAGGTATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040603_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.023 C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSBTAT00000063374fB7969
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGACTCTTCCTAGCAGCT
R:
CCTCACCCATGGTTCCTTTCC
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development