RnoEX6002449 @ rn6
Exon Skipping
Gene
ENSRNOG00000023233 | LOC102546648
Description
uncharacterized LOC102546648 [Source:RGD Symbol;Acc:7541917]
Coordinates
chr1:99486253-99489250:+
Coord C1 exon
chr1:99486253-99486312
Coord A exon
chr1:99488667-99488793
Coord C2 exon
chr1:99489149-99489250
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCTACATTTTGTGTTACAGAGA
3' ss Score
8.31
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATGAATTTGTCCCAGAAGCCCCAGAGGGTGCACCCACAGGAGCAGGATGGGTCATGTGAG
Seq A exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTTAGCCAGGAGGAGTGGCGGCGCCTGGACCCTGCCCAGAGACGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
Seq C2 exon
GCTACCCTATTCCCAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGAAGACACAGACAGGAGAGGCTAAGTTCCCACATCATCAGTGTTGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023233-'3-3,'3-1,8-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATTTGTCCCAGAAGCCCC
R:
CTTGACACCAACACTGATGATGTG
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]