MmuEX0053633 @ mm9
Exon Skipping
Gene
ENSMUSG00000055102 | Zfp819
Description
zinc finger protein 819 [Source:MGI Symbol;Acc:MGI:1921650]
Coordinates
chr7:50865156-50868009:+
Coord C1 exon
chr7:50865156-50865348
Coord A exon
chr7:50867353-50867479
Coord C2 exon
chr7:50867917-50868009
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGTGAGTATGTTGTTTCAGAGA
3' ss Score
3.06
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATTCCTGAGTCAGGCCAAGACATTCATGCTGCTGACTTTCTAGCACAACCAAGCTGAGTTCTGCCTGTCAGCTCTACCCAAAGGCTCCACATGCTCACCTGAATCCTGAGGGAATCCAGACATGGCTGCTGACATGAATTTCTGTCAGAAGCTCCAGAGACTGGGAACAGAGGAGCAGGACGGGCCGTGTGAG
Seq A exon
AGATTGGTGTCCTTTGAGGATGTAACTGTGAACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCCGCCCAGAGACGCCTGTACCAGGACGTGTTGCTGGAGATCTACAGCCACCTCTTGGTAGTGG
Seq C2 exon
GGTATTCCAGGCCAGAGGTCATCCTCAAGATGAAGAAAGTTAAGGACTCGCCGATGGGGAAGGTTGATTTCCCACATCAGAGGTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055102-'6-5,'6-3,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGACATTCATGCTGCTG
R:
AAATCAACCTTCCCCATCGGC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: