HsaEX6096489 @ hg38
Exon Skipping
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr19:51573150-51581882:+
Coord C1 exon
chr19:51573150-51573401
Coord A exon
chr19:51581391-51581517
Coord C2 exon
chr19:51581787-51581882
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTGGGGTACACTGTTACAGGCA
3' ss Score
3.4
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCTTCTGCAGAACCCCCAGGTCAGGCCACATCATTGAGGCTGCAGGATCTCTCTTCATAGCCCAGTACGACTCTCCGCCGTGTCCCTGGTTGGAAAATCCAAACACCTATCCAGCTTCTGGCTCCTGGGAAAAGTGGAGTTGTCAGCAAGAGAGACCGAGAGTAGAAGCCCAGAGTGGAGATGCCTGCTGATGTGAATTTATCCCAGAAGCCTCAGGTCCTGGGTCCAGAGAAGCAGGATGGATCTTGCGAG
Seq A exon
GCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTCTATAGCCATCTCTTCGCAGTGG
Seq C2 exon
GGTATCACATTCCCAACCCAGAGGTCATCTTCAGAATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAGTCTCACATCAGAGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497-'2-8,'2-7,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.726 A=0.023 C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTCCCTGGTTGGAAAAT
R:
GAGACTTCAGCCTCCTCCACA
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains