MmuEX6010218 @ mm10
Exon Skipping
Gene
ENSMUSG00000056592 | Zfp658
Description
zinc finger protein 658 [Source:MGI Symbol;Acc:MGI:2652821]
Coordinates
chr7:43564614-43567743:+
Coord C1 exon
chr7:43564614-43564843
Coord A exon
chr7:43567268-43567394
Coord C2 exon
chr7:43567645-43567743
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTACCTTTTCTGTTACAGAGA
3' ss Score
10.45
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTCAAAGGCAGGCCACATCAGCCAGGCTGGGGGATTTTTCTACCTCACCACAGCTGGCCTCTCTGCTCAGCTGCTCTCCTGGGAACCTCTAGCCACTCAACCAGCTTCCAGTTCCTGAGAAAAATTGCATCTGCCAGCAAAGAGGCAAGAGAGGAAACATACCTGCTGACATGAAATTGTCCCAGAAGGCCCAGAGACTGCACCCACAGGAGCAGGAAGGGTCCCGTGAG
Seq A exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCGACGCCTGGACTCCGTCCAGAGACACCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
Seq C2 exon
GCTACCCTGTTCCTAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGGAGGCACGGACAGGAGAGGCCAAGCTCCCACATCCTTGTTGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056592-'1-8,'1-4,3-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.023 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGGGGGATTTTTCTACC
R:
TATCCTGAAGATGGCCCCAGG
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types