BtaEX6006747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002113 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:HGNC:13107]
Coordinates
chrX:91043813-91044478:-
Coord C1 exon
chrX:91044455-91044478
Coord A exon
chrX:91044174-91044294
Coord C2 exon
chrX:91043813-91043908
Length
121 bp
Sequences
Splice sites
3' ss Seq
ATGGGATTGTATTTTTACAGGTG
3' ss Score
7.1
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CATAGCAAATGTCAAGATACTTTA
Seq A exon
GTGTCATTCGAGGATGTCACCGTGGACTTCAGCCAGGAGGAGTGGCAGCACTTGGACCCTGTTCAGCAGCGCCTGTATTGGGATGTGACACTGGAGACCTACAGCCACCTGTGCGCAGTGG
Seq C2 exon
GTTACCAAGTTCCCAAACCAGAGGTCATCTTCAGACTGGAGCAAGGAGAGGGGTCATGGACATTGGACAAAGAAACTCCACATCACAGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002113-'2-1,'2-0,3-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]