HsaEX6051530 @ hg38
Exon Skipping
Gene
ENSG00000147124 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:HGNC:13107]
Coordinates
chrX:47455921-47467760:-
Coord C1 exon
chrX:47467410-47467760
Coord A exon
chrX:47456272-47456398
Coord C2 exon
chrX:47455921-47456016
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACAGCATTGTGTCGTTACAGGCT
3' ss Score
6.55
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CATCCAGCACAGTGAGCGGCCCCTGGGCACCACCAGAAAACATTTGTGAGTGAACGTGGAGTGATGACCATGTGGACACTGTCTTTCCAGGGTTTCTTGGAGCCTCTGCAGAGTCTGGGGGCCAGGCTTCTTAGTGGAAACTGCAGGATCTTCCTTCTGACCCCTGCTTGCCTCGCCCCAGCAGCTCCGGTTGAGTCCACAGATGCCAGCTCAGCTTCCAGCTTGGGGAAGAGTGGGGTTGTCAGCAGGAGAGCCTGAGGGCTGAGGCCCAGCGTGAACATGGCAGCTAATGGGGACTCTCCCCCATGGTCCCCGGCCCTGGCTGCAGAGGGACGTGGCAGCTCATGTGAG
Seq A exon
GCTTCAGTGTCATTTGAGGACGTGACTGTGGACTTCAGCAAGGAGGAGTGGCAGCACTTGGACCCTGCCCAGAGACGCCTGTACTGGGATGTGACACTAGAGAACTACAGCCACCTGCTCTCAGTGG
Seq C2 exon
GGTACCAAATTCCCAAGTCAGAGGCTGCCTTCAAGTTGGAGCAAGGAGAGGGGCCATGGATGCTGGAGGGGGAAGCCCCACATCAGAGCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147124-'4-8,'4-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.019 C2=0.374
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTTCTGACCCCTGCTT
R:
CCTTGCTCCAACTTGAAGGCA
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains