MmuEX0053029 @ mm10
Exon Skipping
Gene
ENSMUSG00000029587 | Zfp12
Description
zinc finger protein 12 [Source:MGI Symbol;Acc:MGI:99157]
Coordinates
chr5:143236254-143240415:+
Coord C1 exon
chr5:143236254-143236316
Coord A exon
chr5:143239954-143240080
Coord C2 exon
chr5:143240320-143240415
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCTGATCATGTCGTTGCAGGGC
3' ss Score
7.11
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACCCGGCTGCATTAGTCCTTCTACAGACTTTTCCTACTGCAGCGGAAGATGAATACATCCTTA
Seq A exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAAAGGACGACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
Seq C2 exon
GGTATGACATTATCAAACCGGATGTTATCATCAAGTTGGAACAAGGAGAAGAGCCATGGATAGTAGAAGGAGCGTTCTCGCCTCAGAGCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029587-'3-5,'3-2,4-5=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.151 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCTGCATTAGTCCTTC
R:
CTGGATAGCTCTGAGGCGAGA
Band lengths:
158-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types