MmuEX0053029 @ mm9

Exon Skipping

Gene

ENSMUSG00000029587 | Zfp12

Description

zinc finger protein 12 [Source:MGI Symbol;Acc:MGI:99157]

Coordinates

chr5:143997933-144009627:+

Coord C1 exon

chr5:143997933-143997995

Coord A exon

chr5:144001633-144001759

Coord C2 exon

chr5:144005741-144009627

Length

127 bp

Sequences

Splice sites

3' ss Seq

TTCTGATCATGTCGTTGCAGGGC

3' ss Score

7.11

5' ss Seq

TGGGTGAGG

5' ss Score

6.74

Exon sequences

Seq C1 exon

ACCCGGCTGCATTAGTCCTTCTACAGACTTTTCCTACTGCAGCGGAAGATGAATACATCCTTA

Seq A exon

GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAAAGGACGACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG

Seq C2 exon

ATGAGATCCGGCACATGAGCAGGCTGATGGAGGAGGACCAGGGAGGTGAAGAGAACCAGTCAAGTTCAGCTGTGTTCAGCTACAGAAGCCGGGCTGATGCCTCTAGTAAGGCCACTGATGGAGAAACAAAGCCCTTTCCCTCACAGAAGGCCCTCCCTCAGTGCAACTCCTGTGAGAAGAGCCTGATGTGTGTCTCGGCGTTCATCCGAAGCGACGGAAGCTACGCAAAACTGAGGCCCAATGTGTGTGCCGGGTGTGGGAAGCCCCTCCCCTGCAGCAAGCCCGAGGAAACACACCCTGGAGGTGAGTCTTACGAATTTAGTGGGGATGGAGATGAGGACCCTCTCGGTGAAGAAGGCGTGTATCAGAAGGGTCACTTTTTGGAGGAGCCCTTTGAATACGTTGAGTGCCAGAAATCCTTCCCCAAGGGCACTGTGTTTCTTAATCACCTGGAAGAGGAGCCCTGCGACTGGAATGACGCTGAGGTCGCTTTCCTGCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000029587-'1-5,'1-2,2-5

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.164 C2=0.144

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)

Main Inclusion Isoform:

ENSMUSP00000076693