MmuINT0179924 @ mm9
Intron Retention
Gene
ENSMUSG00000055102 | Zfp819
Description
zinc finger protein 819 [Source:MGI Symbol;Acc:MGI:1921650]
Coordinates
chr7:50867353-50868009:+
Coord C1 exon
chr7:50867353-50867479
Coord A exon
chr7:50867480-50867916
Coord C2 exon
chr7:50867917-50868009
Length
437 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AGTATCCTTCTAATCCACAGGGT
3' ss Score
6.92
Exon sequences
Seq C1 exon
AGATTGGTGTCCTTTGAGGATGTAACTGTGAACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCCGCCCAGAGACGCCTGTACCAGGACGTGTTGCTGGAGATCTACAGCCACCTCTTGGTAGTGG
Seq A exon
GTGAGCCTGGCTGGCCTGGGGATCCAGGATGGGCCTCCTATTCTTTTTGCAGAATGTGACAGACTGTCGGAAGTCTGTCACGATTTCTTACTTGTTCTTATTCACTCCTGTTGGGCACCTTTTAAATGTCACTTTAAAAAAAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCATGACCTGCGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATTTCTCCAGCCCTAAATGTCACTTTTTGTACAGCATTTGATGTTGAATTATTGCTTAGCCCATGCAGAGTTCATTGGATACCCTCTAAAGCCCTCTAAAGCACACCAATCCAGTATCCTTCTAATCCACAG
Seq C2 exon
GGTATTCCAGGCCAGAGGTCATCCTCAAGATGAAGAAAGTTAAGGACTCGCCGATGGGGAAGGTTGATTTCCCACATCAGAGGTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055102-Zfp819:NM_028913:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.457
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGAGGATGTAACTGTGAACT
R:
ACCACACCTCTGATGTGGGAA
Band lengths:
207-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: