HsaALTD1010861-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000107281 | NPDC1
Description
neural proliferation, differentiation and control 1 [Source:HGNC Symbol;Acc:HGNC:7899]
Coordinates
chr9:137041062-137043073:-
Coord C1 exon
chr9:137042927-137043073
Coord A exon
chr9:137042502-137042926
Coord C2 exon
chr9:137041062-137041187
Length
425 bp
Sequences
Splice sites
5' ss Seq
CGGGCACAT
5' ss Score
-3.62
3' ss Seq
TGGCCCCTCACCCTCCCCAGGCG
3' ss Score
8.81
Exon sequences
Seq C1 exon
ATGTAGCCGCCTGTCCCGGGAGCCTGGACTGTGCCCTGAAGAGGCGGGCAAGGTGTCCTCCTGGTGCACATGCCTGTGGGCCCTGCCTTCAGCCCTTCCAGGAGGACCAGCAAGGGCTCTGTGTGCCCAGGATGCGCCGGCCTCCAG
Seq A exon
GTACGAGAGCAAAGGGGGAAGTCGATGGGGGGATGTCCCTGCATGAACCTCTCCCTGTAAGAAGCGGCCGGCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTGTGGGAGGCCCAGGCTGTTGGATCTCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAGTAGCCGGGTGTGGTGGCACACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTTAACCCGGGAGGCGGAGCTTGCAGTGAGCCGATTCACCACTGCACTCCAGCCTGGGCGACAGTGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGAAGGCCGGGAGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGG
Seq C2 exon
GCGGGGGCCGGCCCCAGCCCAGACTGGAAGATGAGATTGACTTCCTGGCCCAGGAGCTTGCCCGGAAGGAGTCTGGACACTCAACTCCGCCCCTACCCAAGGACCGACAGCGGCTCCCGGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107281-7-5,9-5,10-5-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF068096=NPDC1=PU(22.9=43.0)
A:
NA
C2:
PF068096=NPDC1=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAGCCGCCTGTCCCG
R:
CTGTCGGTCCTTGGGTAGGG
Band lengths:
257-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains