HsaALTD1010861-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000107281 | NPDC1
Description
neural proliferation, differentiation and control 1 [Source:HGNC Symbol;Acc:HGNC:7899]
Coordinates
chr9:137041062-137043073:-
Coord C1 exon
chr9:137042927-137043073
Coord A exon
NA
Coord C2 exon
chr9:137041062-137041187
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
TGGCCCCTCACCCTCCCCAGGCG
3' ss Score
8.81
Exon sequences
Seq C1 exon
ATGTAGCCGCCTGTCCCGGGAGCCTGGACTGTGCCCTGAAGAGGCGGGCAAGGTGTCCTCCTGGTGCACATGCCTGTGGGCCCTGCCTTCAGCCCTTCCAGGAGGACCAGCAAGGGCTCTGTGTGCCCAGGATGCGCCGGCCTCCAG
Seq A exon
NA
Seq C2 exon
GCGGGGGCCGGCCCCAGCCCAGACTGGAAGATGAGATTGACTTCCTGGCCCAGGAGCTTGCCCGGAAGGAGTCTGGACACTCAACTCCGCCCCTACCCAAGGACCGACAGCGGCTCCCGGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107281-7-5,9-5,10-5-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF068096=NPDC1=PU(22.9=43.0)
A:
NA
C2:
PF068096=NPDC1=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAGCCGCCTGTCCCG
R:
CTGTCGGTCCTTGGGTAGGG
Band lengths:
257-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains