RnoALTD0020323-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013895 | Npdc1
Description
neural proliferation, differentiation and control, 1 [Source:RGD Symbol;Acc:1303156]
Coordinates
chr3:2627752-2629086:+
Coord C1 exon
chr3:2627752-2627898
Coord A exon
NA
Coord C2 exon
chr3:2628946-2629086
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGG
5' ss Score
7.13
3' ss Seq
GAAGGCCCATCACTCCTCAGGGG
3' ss Score
5.4
Exon sequences
Seq C1 exon
ATGCTCCCACCTGCCCTGGAAGCCTGGATTGTGCACTGAAGAGGCGGGCAAAGTGCCCACCAGGGGCACATGCCTGCGGACCATGCCTTCAGTCCTTCCAGGAGGACCAGAGAGGGGTCTGTGTGCCGAGGAAGCACCAATCTTCTG
Seq A exon
NA
Seq C2 exon
GGGAGGGCCTGCCCCAGCCCAGACTGGAAGAGGAGATCGATTCTCTGGCCCGGGAGCTGGCACTGAAGGAGAAGGAGGCTGGGCACCCAAGGCTCACAGCACAGCCCTTGCCTGAGGCTTCCCAGAAGCTCCTGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013895-9-9,10-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.896
Domain overlap (PFAM):
C1:
PF068096=NPDC1=FE(14.8=100)
A:
NA
C2:
PF068096=NPDC1=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACCTGCCCTGGAAG
R:
CAGGTTCCAGGAGCTTCTG
Band lengths:
285-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]