HsaALTD1011713-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:HGNC:2333]
Coordinates
chr4:8592821-8597596:+
Coord C1 exon
chr4:8592821-8592921
Coord A exon
chr4:8592922-8593230
Coord C2 exon
chr4:8597415-8597596
Length
309 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATGCCTCCTTTATGCTGCAGATT
3' ss Score
9.19
Exon sequences
Seq C1 exon
CCGCCGCCCCACCATGCCGCCCCCGCTGCCGCTGCTGCTCCTTACAGTCCTGGTCGTCGCCGCTGCCCGGCCGGGGTGCGAGTTTGAGCGGAACCCCGCCG
Seq A exon
GTAAGGCCGTCCCCTGCCCCCACCCTCCACCCTCCACCCTGCAACCTCTGGGGAGTGTGATCCGTCGCTTCCCAGGGGCCCGGGAGCTTTCTTCCAGTAGGTCACGCGCCTATGGTCCTGGCGAGAACGTCTCCAAAGTGGGCAGCATGTGGCCTGGGACTGGTAGTGTGACCTCTCCCCTGGACGGGGACACCAGGGAGGCTCTCTACGGCATCCAGGCCGGGACCCCAGGCAGCAGAGGGTCACCACGCCTGGGCCGGGGGGTGAGATCTTTTTCCTGTCGGACACAGCAGCAGGGGCGCCCTGCAG
Seq C2 exon
ATTGGTGGAGTCTGGGGACGCTCTGTCTGGACCATGAAGGCCTGGGAGTCACGTGAGGGTGCCAGGGAGGGTGTCTGGACAGTCTCACGCCCACAGGCCCGTGACAGTCATCCAGGGGGACTCAAGCTCCTCTGTGCTCATCCCAGCGCGCGTTGTGGGCGTCCGCGGGCATGGACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-0-1,1-1,2-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGCTCCTTACAGTC
R:
GGATGAGCACAGAGGAGCTTG
Band lengths:
215-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains