HsaEX1009738 @ hg38
Exon Skipping
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:HGNC:2333]
Coordinates
chr4:8593130-8597596:+
Coord C1 exon
chr4:8593130-8593230
Coord A exon
chr4:8594145-8594168
Coord C2 exon
chr4:8597415-8597596
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCTGTCCCTGGCAGGTG
3' ss Score
11.1
5' ss Seq
TCGGCAAGT
5' ss Score
4.02
Exon sequences
Seq C1 exon
CGGCATCCAGGCCGGGACCCCAGGCAGCAGAGGGTCACCACGCCTGGGCCGGGGGGTGAGATCTTTTTCCTGTCGGACACAGCAGCAGGGGCGCCCTGCAG
Seq A exon
GTGCTGAGCACAGCCGTGGCATCG
Seq C2 exon
ATTGGTGGAGTCTGGGGACGCTCTGTCTGGACCATGAAGGCCTGGGAGTCACGTGAGGGTGCCAGGGAGGGTGTCTGGACAGTCTCACGCCCACAGGCCCGTGACAGTCATCCAGGGGGACTCAAGCTCCTCTGTGCTCATCCCAGCGCGCGTTGTGGGCGTCCGCGGGCATGGACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-'2-1,'2-0,3-1
Average complexity
C3
Mappability confidence:
86%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGACACAGCAGCAG
R:
GAGACTGTCCAGACACCCTCC
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains