HsaALTD1011804-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr11:121189764-121191493:+
Coord C1 exon
chr11:121189764-121189880
Coord A exon
chr11:121189881-121190108
Coord C2 exon
chr11:121190706-121191493
Length
228 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTGTTCCTCTCTGTTTACAGCCT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGCTGGACTGGTGTGAGGACAATGGAGGGTGTGAGCAGATTTGCACGAGCCGGGTGGATGGGCCTCTCTGCAGCTGTGTAACAGGAACCCTGCAGGAGGACGGCAAGAGCTGCAGAG
Seq A exon
GTAGACACTCTTCTACCCTGGGGCAGGCAGCTGGGAGACACGGGAGGTTCTTTACCACCAGAAGGAGAAATTCAGATTTGAAGGCCACTCGGTCAGCAACTCTCCCTCGAAAACTCCAGAAATTAAGAAGGAAAGATGGGGAACATGCCCAAGGAATTCTAGGGCCATTAAACAAACAAACAAACAACAACAACAAAAAAACCTTGCTCTTTCATCTAAAATATAAAG
Seq C2 exon
CCTCTAATTCTTCAATGGAACTTCAAGTCTGGACGCTTCTTCTCATCATGATCCAGATTTCATTATGGCATTTTGTCTATAAATCAGGCACGACCTCATAATTAACTCAAGGTTGCTATATAAAGTACTGTAATTTACTTACTTCAACACCCTGTAGGATAAAAAGTGTGTGCCCTTAAGTCAAAACCTATTTGAAAGTGTCCAGCATCTCAAAATGATGCCACCTGCCTCCAATGGTCCAAGGTCCAGAAACCAGCGACCATCCAAGCTCCTCTTTCAGAGTATGAAACGGGGCTTCTACAAGCCAGTTATGGAAAGTATCTCTCTTGTGTAAAATTCCCAAACAGTTGTCACTAGAGACTTTGGTTCACATGAAAAACCAGTAAAGGAAAAAAATTCTGGTTAGAGAAATCTGACTGGAAATCTGACCAGAGAAATCTGTCAAGCCAGTGCTATTTCTGGATCACAGTTTTTTACAGAGAGAGGGCCTGTTGGAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-36-39,37-39-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCTGTGTAACAGGAACC
R:
GCTGGTTTCTGGACCTTGGAC
Band lengths:
306-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains