HsaINT0165594 @ hg38
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr11:121189764-121191493:+
Coord C1 exon
chr11:121189764-121189880
Coord A exon
chr11:121189881-121190705
Coord C2 exon
chr11:121190706-121191493
Length
825 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
3' ss Seq
GTGTTCCTCTCTGTTTACAGCCT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGCTGGACTGGTGTGAGGACAATGGAGGGTGTGAGCAGATTTGCACGAGCCGGGTGGATGGGCCTCTCTGCAGCTGTGTAACAGGAACCCTGCAGGAGGACGGCAAGAGCTGCAGAG
Seq A exon
GTAGACACTCTTCTACCCTGGGGCAGGCAGCTGGGAGACACGGGAGGTTCTTTACCACCAGAAGGAGAAATTCAGATTTGAAGGCCACTCGGTCAGCAACTCTCCCTCGAAAACTCCAGAAATTAAGAAGGAAAGATGGGGAACATGCCCAAGGAATTCTAGGGCCATTAAACAAACAAACAAACAACAACAACAAAAAAACCTTGCTCTTTCATCTAAAATATAAAGGTAATTTAAAAAAACAAGTTATCCAGCCAATTTTAAGGACCATATATTGGCCTACATCTGGCTGCCAAGTCTACTTGGGCTAAGGTTGGGATTGGGATGCTTCCTCCAGCAAACAAGCCTTAGCATATGGTTTCCCTGACCTCTTACAAGGTTGGCAGGACTCTCTTCCTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGACTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAACCACCGGAGTAACTGGGACTACAGGCACACGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGATCCGCCTGTGTTGGCCTCCCAAAGTAGGACTCTCTTAAGATTGGATTAATTCTGCTACTTTGCTGCCTTAGGGCCATTTAGGTAAAATGGGTTCTTGGCAATGAAGTTTCCTTTCTTTAGCTGAGTGCTGCAAAGATGTCTGATCCCTATCAAACAGGTATTTTTCCCCCCATAGGGCTTACTGTGTTCCTCTCTGTTTACAG
Seq C2 exon
CCTCTAATTCTTCAATGGAACTTCAAGTCTGGACGCTTCTTCTCATCATGATCCAGATTTCATTATGGCATTTTGTCTATAAATCAGGCACGACCTCATAATTAACTCAAGGTTGCTATATAAAGTACTGTAATTTACTTACTTCAACACCCTGTAGGATAAAAAGTGTGTGCCCTTAAGTCAAAACCTATTTGAAAGTGTCCAGCATCTCAAAATGATGCCACCTGCCTCCAATGGTCCAAGGTCCAGAAACCAGCGACCATCCAAGCTCCTCTTTCAGAGTATGAAACGGGGCTTCTACAAGCCAGTTATGGAAAGTATCTCTCTTGTGTAAAATTCCCAAACAGTTGTCACTAGAGACTTTGGTTCACATGAAAAACCAGTAAAGGAAAAAAATTCTGGTTAGAGAAATCTGACTGGAAATCTGACCAGAGAAATCTGTCAAGCCAGTGCTATTTCTGGATCACAGTTTTTTACAGAGAGAGGGCCTGTTGGAACGATTTTGAAGTGATGACTGGAAGGTTTGACTCCCTCTAAGGAATCTTGCTGGTGTTTGGAAGTGTCCGATCTACGTTATGCACGTGTTCTGTCTATGAGGCGCTTCTCCACCCACTGTGTCCTTCAACCTTGCCATGGCAGCTTTGGCCACTGGGGATATTGTTGACCTGGGGAACCCCACCCACTCTCCTACCCCCTCGAACCCAATCCCTTCTCTTTTTACAAATCAACCAAATACTTTTTAATGTGTTTTATCCTTAAATAAACTTTGTGTTCAAGTATTCTCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927:ENST00000392793:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGGAGGGTGTGAGCAG
R:
GCTGGTTTCTGGACCTTGGAC
Band lengths:
357-1182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains