HsaINT0165594 @ hg19
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:121060473-121061515:+
Coord C1 exon
chr11:121060473-121060589
Coord A exon
chr11:121060590-121061414
Coord C2 exon
chr11:121061415-121061515
Length
825 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
3' ss Seq
GTGTTCCTCTCTGTTTACAGCCT
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGCTGGACTGGTGTGAGGACAATGGAGGGTGTGAGCAGATTTGCACGAGCCGGGTGGATGGGCCTCTCTGCAGCTGTGTAACAGGAACCCTGCAGGAGGACGGCAAGAGCTGCAGAG
Seq A exon
GTAGACACTCTTCTACCCTGGGGCAGGCAGCTGGGAGACACGGGAGGTTCTTTACCACCAGAAGGAGAAATTCAGATTTGAAGGCCACTCGGTCAGCAACTCTCCCTCGAAAACTCCAGAAATTAAGAAGGAAAGATGGGGAACATGCCCAAGGAATTCTAGGGCCATTAAACAAACAAACAAACAACAACAACAAAAAAACCTTGCTCTTTCATCTAAAATATAAAGGTAATTTAAAAAAACAAGTTATCCAGCCAATTTTAAGGACCATATATTGGCCTACATCTGGCTGCCAAGTCTACTTGGGCTAAGGTTGGGATTGGGATGCTTCCTCCAGCAAACAAGCCTTAGCATATGGTTTCCCTGACCTCTTACAAGGTTGGCAGGACTCTCTTCCTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGACTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAACCACCGGAGTAACTGGGACTACAGGCACACGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGATCCGCCTGTGTTGGCCTCCCAAAGTAGGACTCTCTTAAGATTGGATTAATTCTGCTACTTTGCTGCCTTAGGGCCATTTAGGTAAAATGGGTTCTTGGCAATGAAGTTTCCTTTCTTTAGCTGAGTGCTGCAAAGATGTCTGATCCCTATCAAACAGGTATTTTTCCCCCCATAGGGCTTACTGTGTTCCTCTCTGTTTACAG
Seq C2 exon
CCTCTAATTCTTCAATGGAACTTCAAGTCTGGACGCTTCTTCTCATCATGATCCAGATTTCATTATGGCATTTTGTCTATAAATCAGGCACGACCTCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-TECTA:NM_005422:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGTGTGAGGACAATGG
R:
GGTCGTGCCTGATTTATAGACA
Band lengths:
208-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)