MmuINT0158794 @ mm9
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42137705-42139123:-
Coord C1 exon
chr9:42139007-42139123
Coord A exon
chr9:42138409-42139006
Coord C2 exon
chr9:42137705-42138408
Length
598 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
ATGCTCTGTTCTGTCCCCAGCCT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GGCTGGACTGGTGTGAAGACAACGGCGGCTGTGAGCAGATCTGCACCAGCCGGGTCGACGGGCCTCTGTGCAGCTGTGTGACCGGATCCCTGCAAGAAGATGGAAGGAGCTGCAGAG
Seq A exon
GTGGGCTTCTCCTGAAGGAGACAGGCAGCTAAGTGACCAAGGAAGCTCCTTTCCTACAAACAAGGAGAAGCTCACTGGAGCCCAGTTAGCTTCTTGCCTGTGCAAATCCCAGAGAATCCCAGACAGAGAGGGAAACACCAAAGGAGTTCTAGTACCATCAAAACCAAACCTTCTTGGGTCCCTGGTCTTTCATCTAGAAGAAGTGGGCAATTAAGACAAAATTGACTTAGTAATTTAAAGGCTGTGTTGGCCATAAATCTGACCCCAAGTCCTCTTGTGTTAAGTTGGTAGTCTCAGCTGGACATGGTGGGAGGGACATACCCAGCCACTAGGAAGTTGAGTCAGAAGACCCATGAGGTCCAGAAAATAGAGCCAAGCAGACAGAAAGCCAATCACATTGGCATCTGATTTCCCGGCTCTCCCTCTGAGGTGCACAGGGCTCTCTAAAAGGTTGGATTAATTTGCTTTTCTCCTTCCTTAATCCAGTCTGTTTGAGTTTTTCCCTTTCCCTAAGGAATTCCCTTTAATGTGAGGGCGGCCCATAGGTCGGAACCCTGTTGAACTGATATGTTCTTGCTATGCTCTGTTCTGTCCCCAG
Seq C2 exon
CCTCTAATTCTTCAGTGGAACTTCAAGTTTGGACACTTCTTCTCATCATGACCCAGATCTCACTGTGGCATTTGATCTATAAATCAGGCGCAACCTCATAACGAACTCAGGGTGCTTTCTTCAGTCCCTGTAGGTATAAAAGTGTGTGTCCCCAAGTCAAAACAGCCTCTCACACTCACGCCACCTTCCTCCAGCAGTCAGATCTGGAGGACACCAACGTTCCTGGCTCCTCTTCCACAGTATGCAATAGTGGTTTCTCAAAGCCAATGGGAGGAAAGCACGCTCTTACCCTCAATGCCAAACAGCTGGCACTGGGTACCTAGGTTCAGGCCAGAAGCCAGCCAGGGAAAGCTCTGGCTACAGAAGTCTGATGGGAAAGCTGGCCAGAAAAGTTGGTCTGTCCCGCGCTGTTTCTGGAACACCGTGGTTATAGGCAAGGCTATTGCTGTGACTTTGAATTAAAGTTGCGTCTCTCTCTGTGGAGCCTCGCCAACACTGCCCTCAGCTCACTTTGCTTAGCTCCTCCCCCTCCTGCTGTGGCCTCCACCTTGCCGTGCCAGCTTCAGTCACTGGAGATGATGTTTGTAGACCTGGAGAACCTCACCCTGCCCGTCCCGATCCTCAAACCCAGCCCTTCACATTTTACAAATCAACCAAATAATTTTTAATGTGTTTTATCCTTAAATAAACTTTGTGTTCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-Tecta:NM_009347:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTGGTGTGAAGACAA
R:
GAAGAGGAGCCAGGAACGTTG
Band lengths:
351-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: