RnoINT0149345 @ rn6
Intron Retention
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46603728-46605159:-
Coord C1 exon
chr8:46605043-46605159
Coord A exon
chr8:46604423-46605042
Coord C2 exon
chr8:46603728-46604422
Length
620 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
CATGTCTGTTCTGTCCACAGCCT
3' ss Score
11.37
Exon sequences
Seq C1 exon
GGCTGGATTGGTGTGAAGACAATGGCGGCTGTGAGCAGGTCTGCACCAGCAGGGTCGACGGGCCTCTGTGCAGTTGCGTGACTGGATCCCTGCAAGAAGACGGACGGAGCTGCAGAG
Seq A exon
GTGGGACTTCTCCTGAAGGGGACAGGCAGCTAAGTGACCGAGGAAGCTCCTTACCCACAAGGAGAAGCTCACTGGAGTCCAGTGAGCTTCTTGCCTGTGCAAATCCCAGATAGCCCCAGAAAAGGAGGGGAATACCAAAGGAGTTCCGGTACTCTCACAACAAAACAAAACCTTCTTGGGTCCCTGGTCCTTTGTCTAAAAGAAGCGGGCAATTACGAAAAAATGATTTAGTAATTTAAAGACTGTGCTGGCCCCCAAGACATGAATCTGACCCCCAAGCCCTCTTGTGCTATGTTGGCAGTCTTAGCTGGACTGGTAGGACATACCTATAATCCCAGCTACTAGGAGGTTGAGGCAGGAGACCCATGAGCTCCAGAAAAAAGAGCCAAGCAGACAGAAAGCCAATCACTTGGGCATTTGATTTCCCAGCTCTCTTTCTGAGGTACACAGGGCTCTCTTAGAGGTTGGATTCATTTGCCTTTTTTTTTTTTTTTTTTTTTGCTTTGTTATTTCGGGCCATTTGAATTTTCCCCTTTCCCTAAGAACTTCCCTTTTATGTGAGTGCTGCCCGGTGGGTAGGTCGGAACCCTGTTGAACTGACATGTCTGTTCTGTCCACAG
Seq C2 exon
CCTCTAATTCTTCAGTGGAACCTCAAGTGTGGACCCTTCTTCTCATCATGACCCAGATCTCCCTGTGGCATTTTGTCTATCAATCAGGCGCAACCTCATAATGAACTCAGGGTGCTTCCTTCAGTCCCTGTAGGTATAAAAGTGTGTGCCCCCAAGTCAAAACAACCTCTCAAACTCACGCCACCTTCCTCCAGCTGTCAGATCCGGAGGACACCAGCGTTCCCGGCTCCTCTTCCACACCATGCAATAGTAGCTTCTCAAAGCCAACAGGAGGAAAGCACGCGTTTACCTGAATGCCGAAGCTGGCACTGGGAACCTCGGTGCAGGCCATAAGCCAGTCAGGGACAGCTCTGCTCTCAGAAGTCTGATGGGAAATCTGGCCGGAAAAGTCGGTCTGTCCCGTGCTCTTTCAGGATCGCCGTGGTTACAGACAAGGCTGTTGCCGTGATTTCCAATAAAGCTGCCGTTCTCTCTGCGGAGCCTCTCCGGCACTGCCCTTAGCCCATGCTTAGCTCCTTCCCTCCTGCTCTGGCCTCCACCTTGCCGTGCCAGCTTCGGCCACTGGAGATGATGATTGCAGACCTGGAGAACCTCACCCAGCCCTTCCTGACCCTCAAACCCAGTCCTTCACTTTTTACAAATCAACCAAATAATTTTTAACGTGTTTTATCCTTAAATAAACTTTGTGTTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126:ENSRNOT00000052293:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCCCTGCAAGAAGACG
R:
CCAGCTTCGGCATTCAGGTAA
Band lengths:
342-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]