BtaINT0146759 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32343078-32344317:+
Coord C1 exon
chr15:32343078-32343194
Coord A exon
chr15:32343195-32344216
Coord C2 exon
chr15:32344217-32344317
Length
1022 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTCACTCTTTCTGTTCACAGCCT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGCTGGACTGGTGTGAGGACAATGGAGGATGTGAGCAGATCTGCACGAGCCGGGTGGACGGGCCTCTGTGCAGCTGCGTGACGGGCACCCTGCAGGAGGATGGCAAGAGCTGCCGAG
Seq A exon
GTGAGCTCACAGCCTCTGGGCGGGCAGCCAAGGGCACAGGAAGTTCTTGACTCCCAGAAGGAGACATTCCAATGCAAGGCCCAGTGGGTCAGCAGCTGACCTATGAGACTTCCAGAAAGTAAGAAGGAAAGACGAAGTAAACACCCAAAGAACTTATTGTTCTTGTTGCATCACTAAGTCATGTCTGACTCTCTTGCACCCCCATGGACTGTAGCCTTCCAGGCGCCTCTGTCCGTGGGATTTCCCAGGCAAGAATACTGAATGGGTTGCCATTTCCTTCTCCAGGGGATTTTTTTGACCCAGGGATTGAACCCACGTCTCCTGCATTGGCAAGTGAATTCTTTACCACGGAGCCACTACGGAAGCCCACTCAAGGAATACTAGCATCTTTTTGGTTTTTTAAACCTTTGAGTCCCTGGTCTTTTATCTAAAAGATGGAATTTTTTTTTTTTTAAAGAAAGTTATCTAGCCATTTAATAGAGCTTCCCAGGTTGTGCTAGTGGTAAAGATTCCGCCTGCCAATGCAGGAGAAACAGGAATCGAGGGTTCGATGCCTGGGTCAAGAAGATCCCCTGGAGAAGGAAATGGAAACCCACTTCAGTATTCTTGCCTGGAAAATTCCATGCACAGAGGAGCCTGGAGGGCTATAGTCCATGGGGTCGCAAGGAGTCAGGCCACAACTGAGCAACTTAGCACACACACACATCCAGGCATTTAAGAACCAAGTGGTGACCTTTAATCTGGCCCCCAAGTCTAGGACTGGGGTGTGTGATCCATCAAACACACTTTCCTGCAGCAGCCTTAGCTACCAGGTTTCCCTGGCACCCTTTAAGTTAGCAGGATTCATCTAGAGGTTGAGTTAATTTCACTTCCTCACTGCCACAGTCAAGTCCACTTGGAGAAGGTGGGTTCTTGGCATTGAAAAAAGCAGGCGCGTTTGTTTGAATCCACCAGGATGGCTGATCCATGTCAAGCAGTACATTTTTTCATAGGACTTACCATGTCACTCTTTCTGTTCACAG
Seq C2 exon
CCTCTAATTCTTCCATCGAACTTCAAGTTTGGATGCTGCTTCTCGTCATGACCCAGATTTCACTATGGCATTTTGTCTATAAGTCAGGCATGACCTCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTGGTGTGAGGACAA
R:
TGCCTGACTTATAGACAAAATGCCA
Band lengths:
206-1228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development