GgaINT0138332 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3531090-3531760:-
Coord C1 exon
chr24:3531644-3531760
Coord A exon
chr24:3531185-3531643
Coord C2 exon
chr24:3531090-3531184
Length
459 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
TTTTTCATTTCATTTTGCAGCCT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GATCTGACTGGTGTGAGGACAACGGTGGCTGTGAGCAGATCTGCACAAGTCAGGCGGATGGACCCCTGTGCAGCTGTGTGACAGGGACACTGCAAGGGGATGGCAAGAGCTGCAGGG
Seq A exon
GTAAGCACTGGGGCTTGGTCCAGTCATCGTGTGGGGTGGGCAGGGGCATCTGCTGTGCAACAGAGGGGCTGCTGGCATTCGGAGATGGAGGGAAGGCAGCCTTTTTGGATCAGGACAGAGATGAGGCTTGGATAATGCATGCCTTGGGTTAGCTGGAGTGGGATGGAGGCACTGGAGTGCTGCAAAGCTGGTTATTCTCTGCCGTGTGAAGGGCTTGGCAGGCAGGCAGGCAGCCAAGAGGGGGCACGGGGGGCTCTGTGTGGGGCAGTGTGGGCTTGGCAGCACATGTCAGTGTCTGCAGAGGAGCAAGGCAGACTGGGCAGTGGCTTGTTGATGGGCTTCCCAGCTGAGAGGTGATCAGCTCAGGGGGTCTGGGGAAGGGATTGCCTGCAGGTCCCACCTAACTTGCAGGTGTCCATTGTGTCCATACACGTAATCCTTTTTCATTTCATTTTGCAG
Seq C2 exon
CCTCCAGCTCTTCAGCAGACAGCCGAGCCCAGGCGAGCCTTCTGGTGGCGGCACAGCTGTGGCTGTGGGCGGCTCTGCAGGATCCGACCTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGGTGTGAGGACAACG
R:
ATGAGGTCGGATCCTGCAGAG
Band lengths:
207-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]