HsaALTD1013516-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52396618-52397044:+
Coord C1 exon
chr3:52396618-52396681
Coord A exon
chr3:52396682-52396797
Coord C2 exon
chr3:52396868-52397044
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTCACCCACCCACCCCATAGGTC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GTGATGGAGTTCAAGTCTCTGCTGCTGTCTCTGTGCTTGTTCCATGGGAACGCCCTGGAGCGCC
Seq A exon
GTAAGTTTGGGCCCCTGGGCTTCAACATCCCCTATGAGTTCACGGATGGAGATCTGCGCATCTGCATCAGCCAGCTCAAGATGTTCCTGGACGAATATGATGACATCCCCTACAAG
Seq C2 exon
GTCCTCAAGTACACGGCAGGGGAGATCAATTACGGGGGCCGTGTCACTGATGACTGGGACCGGCGCTGCATCATGAACATCTTGGAGGACTTCTACAACCCTGACGTGCTCTCCCCTGAGCACAGCTACAGCGCCTCGGGCATCTACCACCAGATCCCGCCTACCTACGACCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-112-136,113-136-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(13.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTCAAGTCTCTGCTGC
R:
GTGGAGGTCGTAGGTAGGCG
Band lengths:
237-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains