RnoALTD0009177-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7348765-7349192:-
Coord C1 exon
chr16:7349129-7349192
Coord A exon
chr16:7349013-7349128
Coord C2 exon
chr16:7348765-7348941
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GTTGTTCACCCGTCCCATAGGTT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTTGTGGAGTTCAAGTCCCTGCTGCTATCTCTGTGTCTGTTCCACGGCAACGCACTTGAGCGCC
Seq A exon
GTAAGTTTGGGCCCCTGGGTTTCAACATCCCCTATGAGTTCACAGATGGAGACCTGCGCATCTGCATCAGTCAGCTCAAGATGTTCCTAGATGAATATGAGGATATCCCCTACAAG
Seq C2 exon
GTTCTCAAGTACACAGCTGGAGAGATCAACTATGGTGGTCGCGTCACTGACGACTGGGACCGACGCTGTGTCATGAACATACTAGAAGACTTCTACAACCCTGCTGTGCTCTCTCCGGAGCACAGGTACAGCAAATCCGGCATATACCACCAGATCCCACCCACCTATGACCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-92-91,93-91,94-91-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTTCAAGTCCCTGCTG
R:
TTGAGGTCATAGGTGGGTGGG
Band lengths:
237-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]