RnoALTD0009177-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7348765-7349192:-
Coord C1 exon
chr16:7349129-7349192
Coord A exon
NA
Coord C2 exon
chr16:7348765-7348941
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
GTTGTTCACCCGTCCCATAGGTT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTTGTGGAGTTCAAGTCCCTGCTGCTATCTCTGTGTCTGTTCCACGGCAACGCACTTGAGCGCC
Seq A exon
NA
Seq C2 exon
GTTCTCAAGTACACAGCTGGAGAGATCAACTATGGTGGTCGCGTCACTGACGACTGGGACCGACGCTGTGTCATGAACATACTAGAAGACTTCTACAACCCTGCTGTGCTCTCTCCGGAGCACAGGTACAGCAAATCCGGCATATACCACCAGATCCCACCCACCTATGACCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-92-91,93-91,94-91-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTTCAAGTCCCTGCTG
R:
TTGAGGTCATAGGTGGGTGGG
Band lengths:
237-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]