HsaALTD1015077-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195987957-196000883:-
Coord C1 exon
chr2:196000804-196000883
Coord A exon
chr2:196000704-196000803
Coord C2 exon
chr2:195987957-195988229
Length
100 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
ATTTTTACCCCCTTGTTTAGGAA
3' ss Score
8.86
Exon sequences
Seq C1 exon
GATTCTGTTAGAGCTTTTGAACATCCAGGTTTCATCATGAGGCTGATTCTTGATAATGACACCATTAAGTTTGAACCTGA
Seq A exon
GTTGAGTGACTATATAGATATCTTTCTAAATGTTTATGACGTCATGATTAAAGCTGTCAGTTTTGTGCCAAGAGTTGAGACAAAATTGTATTCCAAGTGG
Seq C2 exon
GAAAGTAAGTCTAAACCAACAACCTTGAAGCCCATAATTCTGAATGAAATTGTAGATGCTCACAAAGAAAAGATCAAGGAAGTTATTATGAAAGAGAGTGTGGCACCTACTGAGCACCTCAGACTCTATGACAAGTATGACTTTTTAATTACCAGAAAAGCTGAGCGAGATGTTGATAACTTCCTCGCAGAAAATCATAGTTATGAAAAAATAATAGATGAAATTTGCAAATACCAGAAACTAATAGAGGAAATACAGTACACATCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-23-24,24-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTTTTGAACATCCAGGT
R:
CATCTCGCTCAGCTTTTCTGGT
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains