HsaEX6017556 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195987066-196000883:-
Coord C1 exon
chr2:196000704-196000883
Coord A exon
chr2:195987957-195988229
Coord C2 exon
chr2:195987066-195987193
Length
273 bp
Sequences
Splice sites
3' ss Seq
ATTTTTACCCCCTTGTTTAGGAA
3' ss Score
8.86
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATTCTGTTAGAGCTTTTGAACATCCAGGTTTCATCATGAGGCTGATTCTTGATAATGACACCATTAAGTTTGAACCTGAGTTGAGTGACTATATAGATATCTTTCTAAATGTTTATGACGTCATGATTAAAGCTGTCAGTTTTGTGCCAAGAGTTGAGACAAAATTGTATTCCAAGTGG
Seq A exon
GAAAGTAAGTCTAAACCAACAACCTTGAAGCCCATAATTCTGAATGAAATTGTAGATGCTCACAAAGAAAAGATCAAGGAAGTTATTATGAAAGAGAGTGTGGCACCTACTGAGCACCTCAGACTCTATGACAAGTATGACTTTTTAATTACCAGAAAAGCTGAGCGAGATGTTGATAACTTCCTCGCAGAAAATCATAGTTATGAAAAAATAATAGATGAAATTTGCAAATACCAGAAACTAATAGAGGAAATACAGTACACATCCATAAAG
Seq C2 exon
ACTATTCGTTTAGGAATGTTTGAAATGCACTGTGAGGAATTAATCAGAGCTTTGGTGAAGCGAGCAGATATTATTTGTGGGAAACTTCTAGCTAAAATGTTCAGAGATCATCAGGAAGTAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997_MULTIEX6-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGAGCTTTTGAACATCCAGGT
R:
ACTTCCTGATGATCTCTGAACAT
Band lengths:
294-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains