GgaEX7005839 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9262335-9265774:-
Coord C1 exon
chr7:9265595-9265774
Coord A exon
chr7:9263951-9264226
Coord C2 exon
chr7:9262335-9262462
Length
276 bp
Sequences
Splice sites
3' ss Seq
TTCTCTATTTTTTTCCAAAGCCA
3' ss Score
7.03
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAGTCAGTTCGAGCCTACGAACACCCAGGTTTCATCCTGAGGGCAACACTTGTGAACGACTGTATTAAATTTGAACCTGACTTTAATGACTATGAGGATGTATTACTGAATGTCTATGCTGTTATGATTAATGCTGTCAGTGATATACCAAGAGTTGAGACCAAATTATTTTCTAAGTTG
Seq A exon
CCAAAAGGCGAGTCCCCATCAGCTGTCTTGAAACCTGTAATCCTTGATGAGATCTTGGATGAACATAAGAGAATGATCAGAGAAGAAATTATCAAAGAAAGCGCTGCACCCATGGAACATGTCAAGGTTTATGATAAGTACAGCTTCCTGATAAACAAGCAAGCGGAACAAGATACTGATCGGTTCCTGACTGAGGAGCATACTTTTGAAGAAATGAAAGGGGATATTATAAAGTATCAGAAACTCAGTGAGGAATTAAAATATAATTCTAGAAAG
Seq C2 exon
TATCTCCGTCTAGGAATGTTTGAACTGCATTGCGATGAATTAATAAACGCTTTGGCAAAGCGAGCAGATAATATTTGTGAAAAAATTATTGCCAAGATGCTCAAGAATCATCAAGATTTAAGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCAGTTCGAGCCTACGA
R:
GATGATTCTTGAGCATCTTGGCA
Band lengths:
292-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]