DreEX6036396 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25239110-25240154:-
Coord C1 exon
chr9:25239975-25240154
Coord A exon
chr9:25239320-25239592
Coord C2 exon
chr9:25239110-25239237
Length
273 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTTTTGTATTCCAGCCT
3' ss Score
6.92
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
CATTCAGTGCGTGTCTATGAGCATCCAGGGTTTGTCCTAAGACTGGTTCTGGACCAAAACACTATCAAATTTGAACCTGATTTCAAAGACTTTGAAGTAACTGTGCTAAATGTGTATAATGCGATGCTGAAATCCTTAAGTGTGATCCCTCGAGTGGAGACAAAGCTGTACTCAGAATGG
Seq A exon
CCTGGCCCAGAAACACACCATACTCTAAAGCCCATCATCCTACCAGAGATCCTGGAGGCCCAGCAGGAGAAGGTCAGACGGGTAATACGTGCAGAAAGTGCTGAGCCTTTGAAGCATGTCCATCTCTATGATAAGTATGCTCCGCTGGTGTCCCAGCAAGCTGAGGAGGATGTTACTCAGTTTTTGCTGGAGCAGCACTCTTTCCAGGAGCTGATGATGGAGGTGATCCGCTACCAACAACTGGCTGATGAAATCCAATGCAGCACAGTGAAG
Seq C2 exon
GTGGTGCGTTTGGGTATGTTTGAACTGCACTCCCATGATCTGGTCCGTGCCCTTGTAAAGCGAGCAGAGGGTCTTTTGCAGAAACTGGTAAATCATATGTTGCAGGGTCATCAGGAGTTCAATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTCTATGAGCATCCAGG
R:
TGAACTCCTGATGACCCTGCA
Band lengths:
293-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]