HsaALTD1015462-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000120054 | CPN1
Description
carboxypeptidase N subunit 1 [Source:HGNC Symbol;Acc:HGNC:2312]
Coordinates
chr10:100063614-100065309:-
Coord C1 exon
chr10:100065188-100065309
Coord A exon
NA
Coord C2 exon
chr10:100063614-100063725
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCCTCCTGCTTTTCCTCTAGCTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
CCAATCTCCACGGAGGGGCGGTGGTGGCCAATTACCCGTATGACAAGTCCTTTGAGCACCGGGTCCGAGGGGTCCGCCGCACCGCCAGCACCCCCACGCCTGACGACAAGCTCTTCCAGAAG
Seq A exon
NA
Seq C2 exon
CTGGCCAAGGTCTACTCCTATGCACATGGATGGATGTTCCAAGGTTGGAACTGCGGAGATTACTTCCCAGATGGCATCACCAATGGGGCTTCCTGGTATTCTCTCAGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120054-4-8,5-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(38.6=98.0)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGTCCTTTGAGCACCG
R:
ATCTCCGCAGTTCCAACCTTG
Band lengths:
142-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains