HsaALTD1015462-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000120054 | CPN1
Description
carboxypeptidase N subunit 1 [Source:HGNC Symbol;Acc:HGNC:2312]
Coordinates
chr10:100063614-100065309:-
Coord C1 exon
chr10:100065188-100065309
Coord A exon
chr10:100065128-100065187
Coord C2 exon
chr10:100063614-100063725
Length
60 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TCCTCCTGCTTTTCCTCTAGCTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
CCAATCTCCACGGAGGGGCGGTGGTGGCCAATTACCCGTATGACAAGTCCTTTGAGCACCGGGTCCGAGGGGTCCGCCGCACCGCCAGCACCCCCACGCCTGACGACAAGCTCTTCCAGAAG
Seq A exon
GTATGTGGAGAAGCAGCTTGTCCCGCCAGGGGAACTTGGGGCTCAGGAGGTGAGCTTAAG
Seq C2 exon
CTGGCCAAGGTCTACTCCTATGCACATGGATGGATGTTCCAAGGTTGGAACTGCGGAGATTACTTCCCAGATGGCATCACCAATGGGGCTTCCTGGTATTCTCTCAGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120054-4-8,5-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(38.6=98.0)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGTCCTTTGAGCACCG
R:
ATCTCCGCAGTTCCAACCTTG
Band lengths:
142-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains