HsaALTD1015951-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000121989 | ACVR2A
Description
activin A receptor type 2A [Source:HGNC Symbol;Acc:HGNC:173]
Coordinates
chr2:147898241-147899567:+
Coord C1 exon
chr2:147898241-147898330
Coord A exon
NA
Coord C2 exon
chr2:147899458-147899567
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAA
5' ss Score
0.56
3' ss Seq
TTTTCTCTGCTTATTTATAGGAC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GATAGTAAGAGAAGTAAGAGGAAAAGAAGATTCAAGAATTGTCAAAGTGTGGAAGAAAAGAAAATGATAAAAGAAGAATGAAATTGAATG
Seq A exon
NA
Seq C2 exon
GACTGATTGTGTAGAAAAAAAAGACAGCCCTGAAGTATATTTTTGTTGCTGTGAGGGCAATATGTGTAATGAAAAGTTTTCTTATTTTCCGGAGATGGAAGTCACACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121989-17-6,18-6,19-6,20-6-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0106418=Activin_recp=PD(33.0=78.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGTGTGGAAGAAAAGAAAATGA
R:
TGCCCTCACAGCAACAAAAAT
Band lengths:
108-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains