HsaALTD1016262-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000123143 | PKN1
Description
protein kinase N1 [Source:HGNC Symbol;Acc:HGNC:9405]
Coordinates
chr19:14463667-14463969:+
Coord C1 exon
chr19:14463667-14463737
Coord A exon
chr19:14463738-14463742
Coord C2 exon
chr19:14463828-14463969
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CGCCTGCCCCGTCCCCCCAGGGA
3' ss Score
11.53
Exon sequences
Seq C1 exon
GTCACCTTCCGCAACCCTGTCATTGAGAGGATTCCTCGGCTCCGACGGCAGAAGAAAATTTTCTCCAAGCA
Seq A exon
GCAAG
Seq C2 exon
GGAAGGCGTTCCAGCGTGCTAGGCAGATGAACATCGATGTCGCCACGTGGGTGCGGCTGCTCCGGAGGCTCATCCCCAATGCCACGGGCACAGGCACCTTTAGCCCTGGGGCTTCTCCAGGATCCGAGGCCCGGACCACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123143-39-29,40-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGCAACCCTGTCATTGAG
R:
ATGTTCATCTGCCTAGCACGC
Band lengths:
99-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains