MmuALTD0010427-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000057672 | Pkn1
Description
protein kinase N1 [Source:MGI Symbol;Acc:MGI:108022]
Coordinates
chr8:83677706-83678006:-
Coord C1 exon
chr8:83677936-83678006
Coord A exon
chr8:83677931-83677935
Coord C2 exon
chr8:83677706-83677847
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCTACCCTTGCAACTTCAGGGA
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTCACTTTCCGAAACCCCATCATCGAGCGGATCCCTAGGCTCCAAAGGCAGAAAAAAATCTTCTCCAAGCA
Seq A exon
GCAAG
Seq C2 exon
GGAAGGCATTTCAGCGAGCCAGACAGATGAACATAGATGTGGCGACTTGGGTGCGGCTGCTCCGTAGACTCATCCCTAGTGCTGTGGCCACTGGCACCTTCAGTCCCAATGCATCTCCAGGTGCTGAGATCCGGCACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057672-37-38,38-38-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCGAGCGGATCCCTAGG
R:
CCCAAGTCGCCACATCTATGT
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types