HsaALTD1016701-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43931247-43932690:-
Coord C1 exon
chr19:43932608-43932690
Coord A exon
chr19:43932604-43932607
Coord C2 exon
chr19:43931247-43931365
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TTTTTTTGTATTTTTAATAGAGA
3' ss Score
7.02
Exon sequences
Seq C1 exon
ACTTCAGGGACCTCTGTTTCATGGACATTATCATATTCTTCTCAAGAGTACCCAGCAAGAGGTTTGCAAAGAGGAGTTATTCA
Seq A exon
GTGA
Seq C2 exon
AGACGGGGTTTCACCATCTTGGCTAGGCTGGTCTTGAATTCCTGACCTCGTGATCCACCCGCCTGGGCCTCCCAAAGTGCTGGGATTACATGCGTGAGCCACCGTGCCCAGCCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459-4-6,5-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACCTCTGTTTCATGGACA
R:
CCAAGATGGTGAAACCCCGTC
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains