HsaEX0073719 @ hg38
Exon Skipping
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43925325-43934694:-
Coord C1 exon
chr19:43934426-43934694
Coord A exon
chr19:43932604-43932690
Coord C2 exon
chr19:43925325-43925458
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCCTATCTCTCTCCCATTAGACT
3' ss Score
9.2
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GAAAGGAGGCTGTTCTTGGACTATGCCTGACCCGTTTTTTAAGAAAGAGTGCATCACTCAACAGGTGGCGTCTGGAGTTATCCTCTGTGGATTTTCCAGGATCTCAGACAAGATCGTGCAATCTCCCAGCCTCCTTTCCTTCCCCTGCCCTGACTTCTGAAAGAATGCTGCGGGAGAGGAGGAAGGAGAGCATCCTGGCTTCTGGCAGCAGAGCCCCACTGTGACAGGACCTAGCATTCACCTTCCTCTTCTGTTCCGAGTGCGAGAAG
Seq A exon
ACTTCAGGGACCTCTGTTTCATGGACATTATCATATTCTTCTCAAGAGTACCCAGCAAGAGGTTTGCAAAGAGGAGTTATTCAGTGA
Seq C2 exon
AATCAGAATCATACCCTGAGAGCTACAAGAACTCCATTTTTCACTGTGCAGAGGCTCTCTGCTGAAGGGTCAAGTGGAATCTGGAATCCAGCCCATGTTTCCCCATCATCAAGCCATGTGAAGCTGCAGACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459_MULTIEX2-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAATGCTGCGGGAGAG
R:
AGAGAGCCTCTGCACAGTGAA
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development