HsaALTD1016936-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr16:57479442-57480377:-
Coord C1 exon
chr16:57480330-57480377
Coord A exon
chr16:57480295-57480329
Coord C2 exon
chr16:57479442-57479688
Length
35 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CCTGTCATTTTTATTTCCAGCAG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTGCGGAAGAGTTGCAGGGCCTGGGAACAGGCCCTGCGTGAGCTCGAG
Seq A exon
GTAGTGATTCTTAGCCTGGGGCTGGAGAGAAACAG
Seq C2 exon
CAGGCGCGGGGCGAAGGAGCTGCTAGAACAATGCTGAGGCGGGTGAGGTGAGGAGCAGCCCCTCGCGGCAGCCCCGACAGAGTGTCTGGAACAGGTGATTGGAGGAGCCGGAGACCCAGGCACCTGGGCATCCTTCCCCTCGCCTCTGCCAGGCCCCGCGCCCCTAAAAGGTGGGAAAACCATGGCGACCAATTTCAGTGACATCGTCAAGCAAGGCTACGTGAAGATGAAGAGCAGGAAGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170-6-14,7-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PU(13.5=63.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGGCCCTGCGTGAG
R:
TCACCTGTTCCAGACACTCTGT
Band lengths:
122-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains