HsaALTA1022121-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr16:57479442-57486495:-
Coord C1 exon
chr16:57486305-57486495
Coord A exon
chr16:57479686-57479688
Coord C2 exon
chr16:57479442-57479685
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CCTGTCATTTTTATTTCCAGCAG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GCGGAGTCCCAGCCGGAGCCCCAGCCGGAGCCCGATCCCTAGCCCTGCGGCCGCGCCTCCCTCGCCGTCCCCGCCTGGAGCCCGGCGCCGCCGCCGCCCTGCCGCCCCCGCCAGCCGCGCCGTGACGCGGGCATGAGCCTGCTCCGCGGCGCCGCTGAGCAGGCGCTCCTGGCCCGGGCCTCGGCGCCCAG
Seq A exon
CAG
Seq C2 exon
GCGCGGGGCGAAGGAGCTGCTAGAACAATGCTGAGGCGGGTGAGGTGAGGAGCAGCCCCTCGCGGCAGCCCCGACAGAGTGTCTGGAACAGGTGATTGGAGGAGCCGGAGACCCAGGCACCTGGGCATCCTTCCCCTCGCCTCTGCCAGGCCCCGCGCCCCTAAAAGGTGGGAAAACCATGGCGACCAATTTCAGTGACATCGTCAAGCAAGGCTACGTGAAGATGAAGAGCAGGAAGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170-3-15,3-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PU(13.5=63.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCCCTAGCCCTGCGG
R:
TTGTTCTAGCAGCTCCTTCGC
Band lengths:
187-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains