RnoALTA0012580-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015679 | Dok4
Description
docking protein 4 [Source:RGD Symbol;Acc:1310084]
Coordinates
chr19:10563423-10568391:+
Coord C1 exon
chr19:10563423-10563569
Coord A exon
chr19:10568180-10568182
Coord C2 exon
chr19:10568183-10568391
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
CCTGTCATTTGGGTTTCTAGCAG
3' ss Score
6.34
Exon sequences
Seq C1 exon
CCGCTGGATCCGGAGCTGGCGGCTGCGCTTCGCTCCAGTCTACAACCGGAGCGGCGCGCTGCCACCCCACCTTCCCAGCCGCGCCGGGTCGAGACCCGGGCATGAGCTCGCCCCGCGTCCCGCGGAGCCAGCGCCTCCGGCGCCTAG
Seq A exon
CAG
Seq C2 exon
GAGCTGGGCGAAGGAGCCGCTAGAACAATGCTGAGGTGGGGGAGGTGAGGAGTGTCTTAAACAGGTGATCAGGGGAGACCAAGCCACCTGGGCACCCTCCCCGGACTCAGCCCAGCCGGCACCCCAAAGACAGTGGGGCAACCATGGCGACCAATTTCAACGACATCGTCAAGCAAGGCTATGTGAAGATGAAGAGCAGGAAGCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015679-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PU(13.5=63.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGACCCGGGCATGAG
R:
CTCAGCATTGTTCTAGCGGCT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]