Special

RnoINT0050517 @ rn6

Intron Retention

Gene
Description
docking protein 4 [Source:RGD Symbol;Acc:1310084]
Coordinates
chr19:10563423-10568391:+
Coord C1 exon
chr19:10563423-10563569
Coord A exon
chr19:10563570-10568179
Coord C2 exon
chr19:10568180-10568391
Length
4610 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
CCTGTCATTTGGGTTTCTAGCAG
3' ss Score
6.34
Exon sequences
Seq C1 exon
CCGCTGGATCCGGAGCTGGCGGCTGCGCTTCGCTCCAGTCTACAACCGGAGCGGCGCGCTGCCACCCCACCTTCCCAGCCGCGCCGGGTCGAGACCCGGGCATGAGCTCGCCCCGCGTCCCGCGGAGCCAGCGCCTCCGGCGCCTAG
Seq A exon
GTAAATAGGGGAGTGCGAAGTGGGGAGGGGGGTTCCTAGGCCTCACTGAACCGTGAAACTCCCGCAACTCTCATCCTGGGGCGCCCTTGGTCACCTCCGGAACCTGCGGGCTCTCCCAGCTATGGGGGCGTCCTACTTTAAGGGAGGAGGACTCAGACGCGCCTCTCAAAGGCAGCGGGACCCTGAAATTCCCTGAGCCTTCCACACCCTGCTCCTATCTCTGGGAAGCCCAGGTCTGAACCATACCTCACCTGCATTCCCCACGTATCCCATCAGAGAAACCCAGATCCCGGCTCCCTGAGCCTCTTCCCGGAAGCAGCCTTCCTTGCCTTCCTGCTCCCCAAATTTCAAGAGACACTTTCCTCCTACTGCCTACCCGACCTGCAAGTGACTTTCCTATTCACTCCAGTCCTCCGGGCCAGCAGCCTTCTGCCCTAAAACCTTTCTCCTCCAGCTCTGGGAGTCTGTACACCTTCTTCCTTTGGAGACAGCTAACTGATTTCTGTCACGGTAAAAGGACCGGAGCCGAGCCCTGGGCAGACGGGAGTTCTGTGCAATCTGCCTGCGTGGAGCGGTGGGAGTAGAACAGTTGCCAGGCATTTGGATGGAGGTCTAGGGTGGAGGGCTTTGATGAGACAGGCAGGCAACCAGGGGCCGGGTGTCAACTCCAGCACATTCCAACAGCCGCCAGGGGCCGTGCTTCCTGTACATTCTTTGCTGGCCCTTTTCAGAGAAATGCAGGCTGCTGTGTAGGTCCCAGGAGCTGTGTCCCTCTCGCTCTGTTGCTTGTCTCTGTGCCTGGGTGCTGGGTATTCCTGGGCAGGGCAACAGGCTGGATGTGACCTCATCCAACAACCCAGCCAAGGTGGGGCCCCTAGCCAGGCTCAGACACAGTGTCAGCAGTAGCACAAGTGCCCTGAGGCAGCTTTGAACCAAACTGTGGATCGTGGACCTGGCTGGTTCTCCTGGTCTCTTGGACTTTGCAGGTCTTGCCAATTGTCACGGAGATGCAGAGACTCACACTCACACTCTCTGGAAGCAGAACTAATAATGGTGGCGAGAGGGGAAAGGTGCCCCAGATTGGGCACCCACTCTGTCCTTGATCAGTGTCCTGGTCACTGGGTTGGACTATAGCTAGATAGAAGGGGTTTGGGAACTATCACTGTAGGTGTCTCTACGTGGCTAAGACATCAAATCTCATAGTGATATGTGACAGGCTGCAGTGCTGGATGTCGAGAGACAGCCAATTAGCAAGGCCAGGGTGTCAGGAGGGCCCGAAGGAGGAGGCAGATTTTCAACTGAGACCCAAATGAGGCAGCGGAATATACTTGAGACCACAGGAGGGAATTCAGTTAGAGGCAAGAAAAAGCAAGTGCAGTGAACTTTCCTAAGAAGGCGTTTACATACTGAGAGGTGGCCGGGAGGACAGACAGCAGTGAGTGGTGTGGGGCAGTGGACCGCACTCCTGGGGACCATGAGTGTTCAAGATGTCCTGACCCCTCATGTTCCTCTGCCTCATTCAGTGCTTGTCTTTGTGGCTGTCCTTGGATGGGACCTTCTGGGGCTTGGGAAGCGCACCCTGCTGGTCCCAGATAGCAACCACACAGGGATAGGGCAGCTGGTAGATAAAGTCCTCCAGGCAGGAGACCTGCAACCAGATCTCAGCTGTGAGATGAGAACCCACCGAGGACAATGAGATAGCGTCCAGGCAGGGCTGATTTGCAGCCCTGATAAGATCAGATCTGTGAAGGGTGGGGCAGCCTGGTCAGGCAGACAGGACTCAGGCTTTGCCACTGGCCGAGTAGTGTTTGTTCTATAGCCAAGGCCTCCAGGCAGAATTCTGGGAGGGAACTCTCAGGTGCAGCCCATGGGGCAGGTGGGCAGGGAGAGCCCCAGAATGCCTCCTGTATTCTCTCCTCAGGATGCTGCCCTGGCTGTTTGTGGTGGCCTGGGCCAGGGCAGCTACTGTTTCTCCAGGAATAGCCAGCCACATTGACAGCAGAGTAGAGGAGAGATGGGGGTTGGGAGGAGTTACCCCTAGAACCATGATGAGAATGGCTACTGGAAACCCATCTCGCCCATTTAGTATACAGTACTGAAGGGCTTCCTGCCCAAAGCTGAGGATGCTACACACTTGGAGGGATCTGTCTCTCTGAGGGCCTGTGAGAGGCTAGTGGTGGCCCTGGATGGGCAGGGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACCCTTACTTATTGGCTATTGAGCCTTTAAGGGACCTCAGGGCAGGTTGGGGATTACTTGCTGTTTAAAATCTTGTAGTCCCTCTTGGCAGGGGGAGAGAGTGGGCATGGGTCCCCGTTGCCAGTTAAATCCACGAATCCTCTCTTAATGCTCTCTTTCCACCCCTCCGTGCACTCCATTTTGGGACTGGGTTAGTACTTGTCTCTACAACCTAACGGGACTGAATGAAACCAGAGGCCAGAGAAGGCAGGTCTTGGGCTCCCCCATAAATGTCACTTCTCAGTGGTTCTAGGGTTGGGTGTTCTTTGGACAGACACAGCACATAGCTGAGATCTCGGTGGCCCACGGGTTGTATAGAGGAGATGGCTGATGGAGCCAGTAAGAGGTGGCTTGCTCCGGGTTGATGGAGACTGGTTTGTAATGGGCTTATGGCCTGGATTGGGCAGGAGGGTCTGGAGAGTATAGCTACCCCCTGGCTTCATTTCATCATTTAAAGTAGAAAGACTGGCCTTGAACTTGTGGCAGTCCTGCTGCTTTTACCCCCACCCCCAATGTTAGGATTACAGGTGTATATTATCACATTCTACCTAGGTCCTTTAGAGAAACAAAACAAAAAACAAAAAACCTAATGTGAAAGCTGAGGGACTACACAGCCTGCTAGAGCTATATTCCTTGACGTCTGGGCCACCTTAGAAGAACCAGGGGCCTGGTGACTCTTTGGGGGACAGGTTGGGAAACTGGCCTTCAGTGCTGGGGACTGACCGTCAGTGGCCGGCTTGCTAGTCATTTTAGTAGGGAACTCCATGGAGCCAGTACTTGTTCTGGGGACAAGACAACCCCAGAGGCAGGTCATGGTGTAGACAGAGCTGGGGAAATGGACCCCTCTCTGGCTGCCAGAGGCCAGTGCGACTGGGCTAGCGATGATTAGACCTGGAAGAGGCAAAGCAGTGCTGTGGGAGCATCCTGGGGTGGAGGATGTGAAGGGGCCATCACTGCACAGAAGCAAGAGGTAACCCCTCTGCCCCATCTCTTGTTTGCATGTGCCCAATGGAGTGTACCATCTGTTCCTTGTTAGGGACTCAATAGACAGCTAGGAGATTAATTAATACCAAGCTGCTGGCAGACTGAGATGTGTGCCTGCCCTAGGGCCCCATTCTGGCAGCACAGATGTCCAGCTAACCCCGGAAATGCTACTGCATTGCCACCCAATCATCCTGGAGATGTGCGGAGTCTTGTGGGGAGTCCAGCCCTGACTACCGAGGCTTCATGCAGAGAAAGCTTAGGTGGTAGCAGGAAGCCAAAGTGGGCTACAGGACAGTGTAGGGAACGTCTCATTCGTCTTTGGTTGTGTCCTGGGCTTGCTGTGTGACCTAAGCCTGGTGGCTTACTCTCTCTGGGCTATTTTCTTTTCCAGTGCATAATAGGAAGGCTGATCGCCTAGGTCTGTGTTAACTGAGCCCAATTCTCCCCCTGCTATTCCCATTTTTCCCGAATTGCTTATGCTACATGCTGTGCCCTGGGTCATCCTTCCTATAACTAATGCCTGTCCATGCTCGGAACATACCTCTGCTTGGCTTGTCCGGACCAAGTGTCCTGTTGGGACCCTATCCCCACCCTCAGGCTGGCCTACTCCTTCCAAGGCCAGGGTAAATGTCTACTTCCTCAGAGGCCACAGCCCACAGTCCCACACATTTCTCAAACTTATCCAGGGCCCCACCTCTTGGACTCTGCCCTCCTACCCAGGAAACACCAGTCAGTACCCAGAAGAACTGCCCAAGAGTCCAGGGGCCAGGAGTAGGGTCTGAATGACTTGAGCTGGTGACTCAGCCTCAACAGGCTGGAGAGAACCAGGTTTAGTGTGGTGAGCTGGAAGGGTAGGCTTTTGTAGATAACCGAACCCTGGGCCATCTCCTGATCCCCTCACCATTTCCTGGAAGTTCTCCTCTGGGATCCCAGTACTCTCAGGAAGGTGGGGTGCTCTGGCAAGTTGCTCTAAGTCTGCCCCAAAGTTGTAAGAGGATGGCTAGGTGCCACCAAGCTTAGGGTCTAGGCTTCTCCAAAGCCCACTACCTCCCTTCCTTCCCCTCTTTTGCCTTCACCTCCACAGCAAGCAGAACGGGAGCCAGCCATCCCAGGAAGGGGTTAACTGCCAGCCCCAGCCTTGAGGGAGGGGACTGGGCCGGACCATTTTTCTGCTCTGCCTCCACCTCGCTTTTCCTGAATGGTTCTGCCGTCCTGGGGTTGGGAGGAAGGGAAGGAGGAAGGGCGGGCAGGCAGAGGGAGGGAGGAGTGTGGGAAGAGGAAGGAAAAAAAGAACGAGACAGCTAAGGGGGAAGAGAAAGATGTCACTGGCTCTAATCTCCCTGTCATTTGGGTTTCTAG
Seq C2 exon
CAGGAGCTGGGCGAAGGAGCCGCTAGAACAATGCTGAGGTGGGGGAGGTGAGGAGTGTCTTAAACAGGTGATCAGGGGAGACCAAGCCACCTGGGCACCCTCCCCGGACTCAGCCCAGCCGGCACCCCAAAGACAGTGGGGCAACCATGGCGACCAATTTCAACGACATCGTCAAGCAAGGCTATGTGAAGATGAAGAGCAGGAAGCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015679:ENSRNOT00000021037:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
PF0016924=PH=PU(13.5=63.6)


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]