HsaINT0051467 @ hg38
Intron Retention
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr16:57479442-57486495:-
Coord C1 exon
chr16:57486305-57486495
Coord A exon
chr16:57479689-57486304
Coord C2 exon
chr16:57479442-57479688
Length
6616 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CCTGTCATTTTTATTTCCAGCAG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GCGGAGTCCCAGCCGGAGCCCCAGCCGGAGCCCGATCCCTAGCCCTGCGGCCGCGCCTCCCTCGCCGTCCCCGCCTGGAGCCCGGCGCCGCCGCCGCCCTGCCGCCCCCGCCAGCCGCGCCGTGACGCGGGCATGAGCCTGCTCCGCGGCGCCGCTGAGCAGGCGCTCCTGGCCCGGGCCTCGGCGCCCAG
Seq A exon
GTAAATTGGGGGGCGTGAGGCAGGGAGGGGGACATAGGCCGCCCAGAGCCTGCAAGAGTCTCGGCGACTCCCACCCCTGAGGACCCTCAGTCACTTCCTGAACCTGAGGACGCTCCGTCCCATGGGACCTTCCTACTCTCGGGTGGGGAGCTTAGAGACCCGCCCCCCAAAAGCCAGTGCCTGGGCCCTGAAACTCCCTGCGCTCTCTCCACCCGCAGCTTTCCTCTCCGGGGGAGCCCAGGTCGCGAGCTGACCTCACCCGCACCCACACAAACCTCATCCGAGCAACCCAGGCCCTGCGCTCCCGGGCCTGCCCCCCCGGAAGGGGCATAACCCAGCCCCTGGCAGCTCCCAACCTTCTCTCTGCCTTCCTGCTCCTCCCCGGGGCCTCCTGTTCGCTCACCTCCTCCAAATTCCAAGAGATGATTTTCTGTACCCCAGCTGGCCCCCACTGCCGACCCCCTCCTGCCTATGGGGTTTCTCCCCACAGCCCAAACTCATGGCCAGCTGCCTCCTGTCCTTGAACCTTTCTCCATTGGCCCCCAAGGTCCTGTCCACCTTCTCCCCCAGGGCCCGCAAGGCCCTAGATCCAGTTACATGCTTTCTATTACTGAAAAGGGGCATGAGCCGAGGCTGGGCACCTGGGTGATGTGGCAGAGCAGGGGCTCTGTGCAGCCTGCCTGCCCCAAGCCATGGGGACACGTCAGTTGCTGGGGCGCTTCCGCTTGGATGGAGGGTGTGGGTTGGAGGGGTCTGATGGCCAGGGCAGCGAGGGGCCTGGCAGTATCTCTAGGAGACTCCACTTGGGCAGTGTGAGGTGGGCTTGCTTAGGGCAGGTTCTTTCCTGGACCCTTTCAGAGGGATGTGGCGCTGGTACAGGCTCTTCCTGCCCCCACCCCCAACTCTGATCCCAGGAGCTGTGCCTCCTCTCCCCAGTTGCTTGCCTTGCTGTGCTGGTACTGGTTACTCCCAGCACTTCCCTCCTGGGCAGGGCAGCAGGGCTGGGCATGACCTCACCCCACAACCCTGGCCAAGGTGGGGCCGCCCAACTAGGCCTGGCCTCGATGTCAGCAGCATGCTCTTCCCTGAGGCAGCTCTGAACCAAACTGCGGGTCTTGGGCACAGCTGGTTCTCCAGTAACAACAGCCTGCTGGCCATGCCAGTCAGCGCTGAGACCCAGGAGCTGGGAGCCCACTGTGGCTCACGCACCTCTGGAAGCTGAGCCAGGTCCAGCCAGATGGAGGCTGGTGGTGGTGGAAGAAAGGATGGGGAGGAGGACAAGTCCTGGAGAGAATTACGTGTTCAGCCCCCAAATATTGAGCATCTCCTTCCCACCGGGCACCATTCTGGGAGCTGGGATAGAGCTGTTAACTAGACAGACGAGGCCGAGCCACCAGGGAGCTGACATTCCAGATGTCTCTCTGTGGCCAGAAACAAATGGACAGATGTAAGAACAAGAAAATCCCATGGTGATGTGCGATGAAGACAGCCGCATCTGATGTTGTGAGAGAGGCTGACTAGTGGGGGTCCTTTGGTGAGGGTAGTCAGGGAAGGCCTCCTGGAGGAGGTGGATGAAGCAATGGAATGAACCATGAGCATGTGAGGGAACAATGTTGTAGGTGGGAAACAGCTAGTGCAGTGGTCCCTCGAGGGAGGGGTTTTGGCATGTTGAGGGGTGGGCAGGGGACCCAGGAGAACCAGAGTGGTACGGGGCCACAGCATTACTCTCCTGGCTTAAGGGTCTGGGGGACCATGGCTGTTCAGATGTCCCCTCCTTCTGCCGTCCCTGTCTGCCTAGATGGGTATTTGGTCTGTCTTTGCCATCCACCTTGATGGGACTCACCATGTTTTGGCCGGTGGCCCCTATGGGGATCTGTTGGGAGCACTCCCAGCCGGCCTCTGACAACAATCTTGGGGTGGGGTGGGGGCAGAGCAGCAGGTGATGGGAAATGGCTCTGGTGCTGGAGAGAATCCCACAGATCCAATCTTCGCCGTTGGATCGAGACAGCCAGACGACACTGAGATGGTGTCCAGGTAGGGCTGTTCCTGCAGCCCTGATAAGATCCGATCTGTCAGGGGTGGGGAGGCCCAGCCAGGCAGGCAGCCGCTCGCTCAGTCATTGGTTGCCAGCCTCAGCGCGTTTGTTCTGGAGCCAAAGCCTCCAGGCAGAATCCATGTGCGAGAGGGAGTGCTCAGCATGGCTGCCCTGTGGGGCAGGTGGGCAGTGAGGGCCCTGGGAGTCTCCCTACTCCCCGCCACCCCAGGACACCAGCCCTTCCTGGGGAGAGGAGCATTTTGGAGCTGGCTCTCCCTGCGCGGAAACCTGTGGTGGCCTGGCACCAGGCAGGTACTGTCCCTGGGTAAGCAGCAGTATTGGTACCAGGCTGGGAGGTGGGATGCGGGGGGCCCTTGCTCCCCTCCTCCCTCACTGGAACCCTGAGAGCGACTGCTGGACACCGTGCTTAGCTGGGAGCTCGGAGCTCACAGTGCTGGGGAAGGACCCAAGACCTCAGGTCCTCTCAAAGTAGCAAGCATTCTTCCTGCTGCAGGCCTGTTGGGGACAAGGGCCTGAGGGACAAACAGGGCAGGGGCTACTTCAACCCAATTCCTGGCCTGCCTAGCCTCAGCTGCCCTCCAATTTTTGTATTTTTTTAATTGATTTTTTTGAAATTTTTTAGAAACAGTCTCACTCTATCACCCAGGCTGGAGTGCAGTGGCTTGATCATAGCTCACTGCTACCTGGAATTCCTGAGCTCAAGTGATCCTCCCACCTCGGCCTCCCCAGTAGCTGTGACTACAGGCACGTGCCACATGCCCAGCTTATTTTTTCATTTTTTGTAGAGACGGGGTCTCTCTATGTTGCCGGATCTGGTCTTGAACTCCTGGCCCCAAGTGATCCTCCCACTTTGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGTGCCTGGTCTGCTCTCCACTTCTTGCTGTCCTATTGGGCCTTCACAGGCTCAGCTTGGGGGCCGCCTCGCTTGCTTAACACAGTGCATTCCTTCTGGAGGATGGTGGGTTGGTTCTGGGCCCCCCCCTCACCACTTGACCCCACTGCCTGTCAAATTTGTGGGTCCACCTATTGGCCCTGACCTTTCCCTCCCCTTCCGAACCCCTCTTTGCCCACCATTTTGGGTCCTAGGTTAGGTCTTGCTCTTGCAAACATCATTAGGGACTAAGTGTGGCCAGGGGTCCCTGTGACTCAGGGCCGGAGTGAGCTGGCAGGACTTTGGCACCCAGCCTTCCCCGTGAAGGTCACTCTTCCCGCTGGGGACCTGGGGTATGGGACGGGGTGGGGCCTATGGACAGACGCAGCAGGAGCACTCCTGCGAGCTTGGGGCCACAGTCCCTGGTGGGGCAACACTGGGAAGGAGCAGGCTGGCTTCTGGTGGTTTCACCGCCCTGTCTGGGCAGCAACTCTTGAAGAAAACTATATATATATACATACACACAGCCCTTGGAGTTTTCAAGGCAGAAGCTCTGGCCAGGCGCAGTTGCTCACACCTGTAATCTCAGCACTCAGGGAGGCCGAGCCTTGTGGATCACTTGACCCCAGGAGTTCAAGACCAGCCTGGGCAACATGGTGAAAACCCATCTCTAGGGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGAACGTTGGAAGGCCGAGGCGGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTTTACTAAAAATATGAAACAATTAGCCGGGTATGGTGGTGGGCTCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGAAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATTGGGCCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAACAAAAGCCCCATCTCTACAAACAAGTTTTTAAAAATTAGCTGGGCATGGTGGTATGTACCTGCGGTCCCAGCTATTCAGGAGGCTGAGGTGGGTGGATCACTTGAGCCTGGGTGGTTGAGGCTGCCGTAAGCCGTGATGGCACCCCTGCACTCCAGCCTGGGTGACAGAGCAGGACACTGTCTCAAAAGAAGAAAAAGAAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACCGAAAATTAGCCGAGCATGGTGGTGGGAGCCTGTAGTTCCAGCTACTCGGGAAGCCGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCGCTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAGAAAAAGAAAAAGAAAAAGGGTAGAAGCTCTGTGTCCCAAGTGGGCAAGCAGGTGCCTCATGAATTCATTTCCTCATTTAAAGTAGGTAGATTTATTCTCATTTTTTTCCAATGGGGAAATTAAGGCACAGGGTCTTAAGCGGCTTGCCCAGGACCACACAGCCAGCTGGATTCACACTCCGGGCTGTGCTATGTCTGAGCTATGTTGGATGAACCTGGGGGTCCAGTGGCTTCCTGTAGGCGTGTTCTGACTGGGGGCTTCCACACTGTAGACCCACAGCCAGTGGTCAGCCTGCTAATCATCTTGGAGAGGAACTCCTGAGCTGGTCCTTGCTCTGAGGAGAAGGCAGCCCCAGAGGCAGGCGGTGAAGACAGAGCTGAGAAAATTGACCCATCTCTGGCTGCCAGAGCCCAGGTGTAGCAGAGCTGTTGGGGATCAGTTGCCAGTGAGGGGACCCCAGACCAGACCTTATAGGAGGAATGTAGACTGCCTAACTGTGGGAGGTTCTTGGACCCCAGGGAGCTGGGATAGAGGCAGTGAATGGGCAGGAGTGGAATTGAGGGGCTATCAGGGTGCAAGTGGGATAGGGGCGCATTACCGTCTCTGCCCCTCCCTTGTTTGCGTGTGCCCACTGGGGTAGTCCCATCTGTGCGTGTGCCCACTGGGGTAGTCCCATCTGTTCCTTGTTAGGCACTCAACAGACAGGCCTCCAGGACATTAATTAATGCCAAGCTGCTGGCACAACCAGCAGCATGCCTGTCCCAGGGCCCCGTTCTGGCAGCACAGATACCCAGCTGACCCCAGAAATGCTGCTCCGTTCCCACCCGCTGATCCTGAAGACACAGGGGCCACATTGCTGGCATAACCCTGCCCCCGAGGATGGATGGCAGGGAAGGCTTAGGTGGTGGCAGGCAGCCAGAGACGGCAGCAGGATGTTCCCCCCACAGACTGGTCTCCATCACCACCCTGGACCTTCTCCTTCATCCCTGGCTCTGCCCCAGGCCTGCTGTGTGACCTTAGTCATGTAGCTTACCCTCTCTGGGCAACTTTTCTTTCTCCATCTATAAAATGAAGGGGTTAGACTGGGTCAACACTGAGCCTCCCCCTGAGTCTGAGTCTTTGTTGTCTGTAGATCTGCCTGATTTGGGGTGGCTCTGCTGGTACTCCCACTTCCTGCTCCATATCTACCTCCCCTTGGTATCCCACATTGTCTCCTGCATGTCTTGTTGCCCCAGGGCCCTGACTGGTACTCCTATAATTAACTCCTGCCCATGCTCAGGACATGGAGGGCCTGCTTGGCTTGGCCAGACCCAGTGGCCTGTTGGGGCCCGGGCCCCACCCTCACGGACTGGCCAGCGTTCCCAACCCCAGGGCCAGGGCAAGGCGTCTGCTCCCACAGTGGCTACCTCCAGCCGGCCCAGCACATTCCTCAGGCTTATCTGGAGGCCCGCCCCACTGGACTCTGCCCTCCCACCCAGGAAGCAGCACCCAGAGCTGCGTGCGGAAGAGTTGCAGGGCCTGGGAACAGGCCCTGCGTGAGCTCGAGGTAGTGATTCTTAGCCTGGGGCTGGAGAGAAACAGGTAGAGGACCGGGTGGGGCAGGAGGGTAGAGGGGTTTGTGGGGGCTGCTGAGCTGACCAGGCAAATTGTCTTTAACATTGCAGAGCATGGGGTTCACTCAGACACGCAGGGGTCATCTCCTGCGACCCTCCTCCTCCATCTCTGGGAAGCGCTTCCCTGCTACCCCTGGGAGCTCTTGTACCCAGGAAGGGGCTTTTGCTCTTGGCAAGTTGACCTAAATTTGCACCAGAGTTATCACAGTTGATGGGGCCACGATCCCAAAGTGCTGAGGGACAGCAGCTCCCTGCCACTTCCCTTCCTGGGTCCCCACCTCCACAGTAGGAGCCAGAGCCAGTCCTCCCAGGAAGGGGTTAACTGCCAGCCCCAGCCGTGAGGGAGGGGACTGGGCTGGACCATTTTCCTCACTGCCGCCTCCACCTCGGTTTTCCTGAATGGTTCTGTCGTCCTGGGGTGGGGAGGGAAGGGAAGGAAGAAGGGCGGGAGGAAGGAGGGAGGGAAGAGGGAGAGAGGAGGAGTGTGGGAAGAGGAAGGAAAAAAGAGAGCGAGACAGCGAGAGGAAGAGAAAGATGTCACTGTCTCTAATCTCCCTGTCATTTTTATTTCCAG
Seq C2 exon
CAGGCGCGGGGCGAAGGAGCTGCTAGAACAATGCTGAGGCGGGTGAGGTGAGGAGCAGCCCCTCGCGGCAGCCCCGACAGAGTGTCTGGAACAGGTGATTGGAGGAGCCGGAGACCCAGGCACCTGGGCATCCTTCCCCTCGCCTCTGCCAGGCCCCGCGCCCCTAAAAGGTGGGAAAACCATGGCGACCAATTTCAGTGACATCGTCAAGCAAGGCTACGTGAAGATGAAGAGCAGGAAGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170:ENST00000340099:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PU(13.5=63.6)
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development