MmuINT1009039 @ mm10
Intron Retention
Gene
ENSMUSG00000040631 | Dok4
Description
docking protein 4 [Source:MGI Symbol;Acc:MGI:2148865]
Coordinates
chr8:94870860-94876330:-
Coord C1 exon
chr8:94876131-94876330
Coord A exon
chr8:94871069-94876130
Coord C2 exon
chr8:94870860-94871068
Length
5062 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
GTCATTTGGGTTTCTGGCAGGAG
3' ss Score
5.86
Exon sequences
Seq C1 exon
GTGGCGTCGCGGATCAGCAGAACCAGCTACCTCCCGAGTCTCCTCTGGATCCGGAGCTGGCGGCTGCGCTTCACTTCTAGCTTACAACCAGAGCCGCGCGCCGCCACCCTACCTTCCCCTCCCGGCCGCGCCGAGACGCGGGCATGAGCCCGCCCCGCGTCCCGCGGAGCCAGCGCCCCGGCCCGGGCCTCGGCGCCTAG
Seq A exon
GTAAATAGGGGAATACGAAGCGCGGGGGGGGGGGGGGATCCCTAGGCCTCACCGAGACGTGAGACTCCCGCAACTCTCATCCTGGGGCGCCTGTGGTCACCTCCGGAGCCCGCGGGCTCTCCCAGCTATGGGAGCGTCCTACTTTAAGGAAGGAGGACTCAGACGCGCCTCTCGAAGCCAGCGAGACCCTGAAACTCCCTGAGCCGTCCTCAACCAGCTCCCATCTCTAGGAAGCGCAGGTGTGAGTCTTACCTCACCTGTATTCCCCATGTAACCCATCAGAGAAACCCAGATCCCCGGTTCCCTGAGCCTCTTCCCGGAAGCAGCCTTCCTCGCCTTCCTGCTCCCCAAATTCCAAGAGACACTTTCCTTTTACTGCCTATCCGACCTGCAAGTGGCATTCCTATTCATTGCAGTCCTCCGGGCTAGCAGCCTCCTGCCTTAAAACCTTTCTCCTCTGGCTCTGGGAGTCTGTACACATTCTTTTGGAGACAGCTATCTGTCACAGCATAAGGACCGGAGTGGAGCCTTGGGCAGTCGGGAGTTCTGTGCAATCTGCCTGCGTGGAGCGGTGGGAGCAAAACAATTGCCAGACACTTGGATGGAGGGCTTTGATAAGACAGGGCAGCCAGGGGCCAGGTGTCAGCTCCAGCACATTCCAACAGCCTCCAGGGGCTGCGCTTCCTGCACATTCTTTGAGGGCCCTTTTCGGAGAAATGCAGGCTGCTGTGTAGGTATCCCAGGTAGGTCCCAGGAGCTGTGTCCCTCTCGCTCTGCTGCTAGTCTCTGTGCCTGGGTGCTGGGTATTCCTGGGCAGGGCACCAGGCTGGATGTGACCTCATCCAACAACCCCAGCCAAGGTGGGGCCCCTAGCCAGGCTCAGACAGTGTCAGCAGCAGCACAAGTCCCCTGAGGCAGCTTTGAACAAACTGTGGATCACGGACCCGGCTGGTTCTCCTGGACTTTGCTGGTCTTGCCAGTTGGCACCGAGATGTGGAGAAGTGGGAGCCCGCTGCCGCTTACACTCTCTGGAAGCAGAGCTGATAATGGTGTTGAAAGGATGGGGACAATGCTAGATATAATTAGTGTCCCTCCCTAGATTGGCATCCACTCTGTCCTTTATCAGTGTCCTGGTCACTGGGATGGAGCTATAGCTAGATAGAAGGGGCTTGGGAACTGTCATTGTAGGTGTCCCTACATGGCCAAGTGACAGATGAAGGAACCGGGAACATCAAATCTCATAGTGACATGTGACAGACTGAAACACTGGATGTTGAGAGACAGCTAATTAGCAAGGCCAGGGTGTCAGGAGGGCCTGAAGGAGGAGGCAGATTTTCAGCGGAGCTCCAAATGAGGCAGTGGAATATACTTGAGACCATGGGAGGGAGTTTAGTTAGAGGCAGGAAAAAGCAAGCGCAGTGAACTTTACTGAGAAGGCTTTATGTACTGAGAGGTGGCAGGGTACCAGGGGAGAACAGACAGCAGTGGTATGAGGCATTGGACCACATTGCTGGGGACCATGAGTGTTCAGATGTCCTGACCCCCCCATGTTCGCTCTGCCTGGTTCAGTACTTGTGGCTGGCTCTCCTTGGACCAAACCTTCTGGGGCTTAGGGATCTATGGAAGCGCCCCCTGCTGGTCGCAGACAGCAACCACACAGGGATGGGGCAGTTGGTAGTTAAGGTGGAGACAACCCACCTGCAATCAAATCTCTGCTGTGAAGTGAAAACAGACCGAGGACGGTGAGATAGTGTCCAGGTAGGGCTGATTTGCAGCCCTGATAAGATCAGATCTGTCAAGGGTGGGGCAGCCTGGCCAGGCAGGACTCAGGCTCTGTGGTGTTTGTTCTCGAGCCAAGGCCTCCAGGCAGGGTTCTGGGAGGGAGCATTTAGTGCAGCCTATGGGGCAGGTGGGTAGGGAGGGCTCTAGAACGCCTCCTGTATCCTCCCTACAGGATGCTGCCCTGGCTGGGAAGGGCAGCAGTGTGTGTTGTCCAGTTTTGCTGTTTGTGGTAGCTTGGACTAAGGCAGCTACTATCCCTCCAGGAATAGCCATCCACATTGATACTACTAGGATAGAGGAGAGGTGGGTGGGAGGCTTAACCCTAAAACCATGAGAATGGCTACTGGAAACCCATCTCGCCCATTTAGTATACAGTACTCAAAGACTTCATGTCCAAAGCTGAGGGTGCCACACATTTGGAGGGATCTGTCCCTCTGTGAGAGACTAGTAGTGGCCATGGATAGGTAGGGTTTTTTTTTTTTTTTTCCTGCCCTTACTTATTGGCTGTTGAGCCTTCGAGGGGGGGCTTGGGGCAGATTGGGGATTACTTTCTGTTTAAAATCTTGTACTAAGTCTTGGTAGGGGGTGCAGGTAAGGCATGGGTCCCTGTTGCCTGTTAAATCCATGGATCTTTCTCTCTCTCTCTTTTTTAAAAAGATTTATTTATTTATTTTATGTAAGTGAGTACACTGTAACTGACAGATGGTTGTGAGCCTTCTTGTGGCTGTTGGGAATTGAATTTAGGACCTCTGCTCACTCCTGTTGGCCCCGCTCCGCTCACTCTGGTCAATTCCACTTGCTCAGTCTCTGCTTGCTCCGGCCCAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGACTTCAGACACACCAGAAGAGGGCTTCAGATCTCATTACAGGTGATTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGTCAGTGCTCTTACCCACTGAGCCATCTTACCAGCCCTGGATCCCTCTCTTGATGCTCTCTCTTTCCAACCCTCTTTGCACTCCATTTTGGGACTGGGTCAGTATTTGCGTCTACAACCTAACTGGGAACTTGAATGAGACCAGAGAAGGCAGGTCTTGGGCTGTCCCATAGACGTTACTTTTCAGTGATTCTAGTGTTGGGTGTTCTTGGGAACACCACGGGTTGTACAGAGGAGATGGCTGATGGAGCCAGTAAGAAGTAGCCTCATCGGGTTTATGGAGACTGGTTTGTAATGGGGGCCTGGGCTGGGCAGGAGGCTCTGGAGAATGGAGCTACCTCCTGGCTTCACTCCTCATTTAAAGGAGAAAGACTGGCCTTGAATTTCTACCCCTACTGCCAGTGTTGGGATTGCATGTATATATCATCAGGATTCTACCTGGATCCTTTGGAGAAAAAAAACAAAAAATATCCCCATCCCCCAACCTCCCCTACTCCCCCCCAAAATTAATGTCCCCCCCAAAACTGAGGGACTGCACAGCCTGTGAGAGCTGTATTCCTTGTTGTCTGGGCTACCTAAGAAGATCCCAGGGCCTGGCGACTTCTTGGGGACAGGTTGGAAAACTGGACCAGCCGCCAGTGGCCAGCTTGCTGGTCATCTTAGGAGGGAGCTTGTCCTGGGGTCAAGACAACACCAGAGGGAGGTGGTGGAGACAGAGCTGGGAAAAACTGACCCCTCTTTGGCTGCCAGAGCCCAGGTGTGACAGGACTGGTGACAATTAGACCTGGGAGAGGCAGAGCACTTGCTGTGGGAACATCCTGGACATGGGAGCTGGGATAGAGGATGTGAAGGGCTGAGGGGACTGTCACTACATAGAAGAGAGAGGTAACCCCTCTGCCCCACCTCTTGTTTGCCTGTGCCCAATGGAGTCCCATCTGTTCCTTGTTAGGGACTCAATAGACAGGCCCTCTAGGAGATTAATTAATACCAAGCTGCTGGCAGACTGAGATGCGTGCCTGCCCTAGGGCCCCATTCTGGCAGCACAGATGTCCAGCTGACCCCAGAAATGCTACTGCATTGCCACCCAAGGATCCTGGAGATGTGGGGAGTCTTGTGGGGAGCACAACCCTGACTATTGCGGCTTCATGGCAGAGAAAGCTTAGGTGGTGGCAGGAAGCCAAAGGGGGCTACAAGATTGTGTTCCACACGGGGAACTTCTCATTCATCTTTGGTTGTGTCCTGGGCTTGCTTTGTGACCTAAGCCTAGTGGCTTACTCTCTCTGGGGTATTTTCTTTACCAGTGTATAGAATGAAGGTGTCAGATTGAGCCATGGCTGAGATTGCCTGGGTCTGTGTTAACTGAGCCCAGTTCTCTCCTGCTATTCCCAAGTTTCCTGAATTGCTTAGGCTACATCCCATTCCCTGGGTCATCCTTTATATAATTAATGCCTGCCCGTGCTCAGAACATACCTCTTCTTGGCTCGGCCAGATCAAGTGTCCTGTTGGGACCCTGTCCCTACCCTCAGACTGGCCTGCTCCTTCCAGCTCCAAGGCCAGGGTAAATGTCTACTTCCTCAGAGGCCACAGCCCACAGTCCCACACACTCCTCAGACTTATCCAGGGCCTCACCCCTTGGACTCTGCCCTCCTGCCCAGGAAACGCCAGTCCCCAGAAGAGCTGCCCAAGAGTCCAGGGGCCAGGATCAGGGTCTGAATAGCTTGAGCTGGTGACTCACAGCCTCATCAGGCTGGAGAGAACCAGGTATAGTGTGGTGGGATGGAAGTGTAGGCTTTTGTAGGTACAGAACCCTGGGCCATCTCTTGACACACACACACACACACACACACACACACACACACACACACACACCCGCCTCACCATTTCCTGGAAGTCCTCAGGAGGGGGTGTGTGCTCTGGCAAGTTGCTCTAAGTCTGCCCTGAAGTTGTAAGAGGCTGGCCAGTTGCCACCAAGCTGAGGGGCCAGGCTCCTCCAAAACCCCACCGCCTCCTTCCTTCCCTTCTTTTGCCTTCACCTCCACAGCAAGCAGAACGGGAGGCAGCCATCCCAGGAAGGGGTTAACTGCCAGCCCCAGCCTTGAGGGAGGGGACTGGGCTGGACCATTTTTCTGCTCTGCCTCCACCTCGCTTTTTCCTGAATGGTTCTGCCGTCCTGGGGTGGGGAGGAAGAGAAGGAGGAAGGGCGGGCAGGCAGAGGGAGGGAGGAGTGTGGGAAGAGGAAGGAAAAAAAGAAGGAGACAGCTAGGGGGAGAGAAAGATGTCACTGGCTCTAATCTCCCTGTCATTTGGGTTTCTGGCAG
Seq C2 exon
GAGCTGGGCGAAGGATCTGCTAGAACAATGCTGAGGCGGGGGAGGTGAGGAGTGTCTTAAACAGGTGATCGGGGGACACCAAGCCACCTGGGCACCCCTCCCGGACTCAGCCCGGCCGGCACCCCAAAGACAGCGGGGCAACCATGGCGACCAATTTCAACGACATCGTCAAGCAAGGCTATGTGAAGATGAAGAGCAGGAAGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040631:ENSMUST00000046461:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016924=PH=PU(13.5=63.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types