HsaINT0051467 @ hg19
Intron Retention
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:19868]
Coordinates
chr16:57513354-57520385:-
Coord C1 exon
chr16:57520217-57520385
Coord A exon
chr16:57513601-57520216
Coord C2 exon
chr16:57513354-57513600
Length
6616 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CCTGTCATTTTTATTTCCAGCAG
3' ss Score
8.54
Exon sequences
Seq C1 exon
AGCCGGAGCCCGATCCCTAGCCCTGCGGCCGCGCCTCCCTCGCCGTCCCCGCCTGGAGCCCGGCGCCGCCGCCGCCCTGCCGCCCCCGCCAGCCGCGCCGTGACGCGGGCATGAGCCTGCTCCGCGGCGCCGCTGAGCAGGCGCTCCTGGCCCGGGCCTCGGCGCCCAG
Seq A exon
GTAAATTGGGGGGCGTGAGGCAGGGAGGGGGACATAGGCCGCCCAGAGCCTGCAAGAGTCTCGGCGACTCCCACCCCTGAGGACCCTCAGTCACTTCCTGAACCTGAGGACGCTCCGTCCCATGGGACCTTCCTACTCTCGGGTGGGGAGCTTAGAGACCCGCCCCCCAAAAGCCAGTGCCTGGGCCCTGAAACTCCCTGCGCTCTCTCCACCCGCAGCTTTCCTCTCCGGGGGAGCCCAGGTCGCGAGCTGACCTCACCCGCACCCACACAAACCTCATCCGAGCAACCCAGGCCCTGCGCTCCCGGGCCTGCCCCCCCGGAAGGGGCATAACCCAGCCCCTGGCAGCTCCCAACCTTCTCTCTGCCTTCCTGCTCCTCCCCGGGGCCTCCTGTTCGCTCACCTCCTCCAAATTCCAAGAGATGATTTTCTGTACCCCAGCTGGCCCCCACTGCCGACCCCCTCCTGCCTATGGGGTTTCTCCCCACAGCCCAAACTCATGGCCAGCTGCCTCCTGTCCTTGAACCTTTCTCCATTGGCCCCCAAGGTCCTGTCCACCTTCTCCCCCAGGGCCCGCAAGGCCCTAGATCCAGTTACATGCTTTCTATTACTGAAAAGGGGCATGAGCCGAGGCTGGGCACCTGGGTGATGTGGCAGAGCAGGGGCTCTGTGCAGCCTGCCTGCCCCAAGCCATGGGGACACGTCAGTTGCTGGGGCGCTTCCGCTTGGATGGAGGGTGTGGGTTGGAGGGGTCTGATGGCCAGGGCAGCGAGGGGCCTGGCAGTATCTCTAGGAGACTCCACTTGGGCAGTGTGAGGTGGGCTTGCTTAGGGCAGGTTCTTTCCTGGACCCTTTCAGAGGGATGTGGCGCTGGTACAGGCTCTTCCTGCCCCCACCCCCAACTCTGATCCCAGGAGCTGTGCCTCCTCTCCCCAGTTGCTTGCCTTGCTGTGCTGGTACTGGTTACTCCCAGCACTTCCCTCCTGGGCAGGGCAGCAGGGCTGGGCATGACCTCACCCCACAACCCTGGCCAAGGTGGGGCCGCCCAACTAGGCCTGGCCTCGATGTCAGCAGCATGCTCTTCCCTGAGGCAGCTCTGAACCAAACTGCGGGTCTTGGGCACAGCTGGTTCTCCAGTAACAACAGCCTGCTGGCCATGCCAGTCAGCGCTGAGACCCAGGAGCTGGGAGCCCACTGTGGCTCACGCACCTCTGGAAGCTGAGCCAGGTCCAGCCAGATGGAGGCTGGTGGTGGTGGAAGAAAGGATGGGGAGGAGGACAAGTCCTGGAGAGAATTACGTGTTCAGCCCCCAAATATTGAGCATCTCCTTCCCACCGGGCACCATTCTGGGAGCTGGGATAGAGCTGTTAACTAGACAGACGAGGCCGAGCCACCAGGGAGCTGACATTCCAGATGTCTCTCTGTGGCCAGAAACAAATGGACAGATGTAAGAACAAGAAAATCCCATGGTGATGTGCGATGAAGACAGCCGCATCTGATGTTGTGAGAGAGGCTGACTAGTGGGGGTCCTTTGGTGAGGGTAGTCAGGGAAGGCCTCCTGGAGGAGGTGGATGAAGCAATGGAATGAACCATGAGCATGTGAGGGAACAATGTTGTAGGTGGGAAACAGCTAGTGCAGTGGTCCCTCGAGGGAGGGGTTTTGGCATGTTGAGGGGTGGGCAGGGGACCCAGGAGAACCAGAGTGGTACGGGGCCACAGCATTACTCTCCTGGCTTAAGGGTCTGGGGGACCATGGCTGTTCAGATGTCCCCTCCTTCTGCCGTCCCTGTCTGCCTAGATGGGTATTTGGTCTGTCTTTGCCATCCACCTTGATGGGACTCACCATGTTTTGGCCGGTGGCCCCTATGGGGATCTGTTGGGAGCACTCCCAGCCGGCCTCTGACAACAATCTTGGGGTGGGGTGGGGGCAGAGCAGCAGGTGATGGGAAATGGCTCTGGTGCTGGAGAGAATCCCACAGATCCAATCTTCGCCGTTGGATCGAGACAGCCAGACGACACTGAGATGGTGTCCAGGTAGGGCTGTTCCTGCAGCCCTGATAAGATCCGATCTGTCAGGGGTGGGGAGGCCCAGCCAGGCAGGCAGCCGCTCGCTCAGTCATTGGTTGCCAGCCTCAGCGCGTTTGTTCTGGAGCCAAAGCCTCCAGGCAGAATCCATGTGCGAGAGGGAGTGCTCAGCATGGCTGCCCTGTGGGGCAGGTGGGCAGTGAGGGCCCTGGGAGTCTCCCTACTCCCCGCCACCCCAGGACACCAGCCCTTCCTGGGGAGAGGAGCATTTTGGAGCTGGCTCTCCCTGCGCGGAAACCTGTGGTGGCCTGGCACCAGGCAGGTACTGTCCCTGGGTAAGCAGCAGTATTGGTACCAGGCTGGGAGGTGGGATGCGGGGGGCCCTTGCTCCCCTCCTCCCTCACTGGAACCCTGAGAGCGACTGCTGGACACCGTGCTTAGCTGGGAGCTCGGAGCTCACAGTGCTGGGGAAGGACCCAAGACCTCAGGTCCTCTCAAAGTAGCAAGCATTCTTCCTGCTGCAGGCCTGTTGGGGACAAGGGCCTGAGGGACAAACAGGGCAGGGGCTACTTCAACCCAATTCCTGGCCTGCCTAGCCTCAGCTGCCCTCCAATTTTTGTATTTTTTTAATTGATTTTTTTGAAATTTTTTAGAAACAGTCTCACTCTATCACCCAGGCTGGAGTGCAGTGGCTTGATCATAGCTCACTGCTACCTGGAATTCCTGAGCTCAAGTGATCCTCCCACCTCGGCCTCCCCAGTAGCTGTGACTACAGGCACGTGCCACATGCCCAGCTTATTTTTTCATTTTTTGTAGAGACGGGGTCTCTCTATGTTGCCGGATCTGGTCTTGAACTCCTGGCCCCAAGTGATCCTCCCACTTTGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGTGCCTGGTCTGCTCTCCACTTCTTGCTGTCCTATTGGGCCTTCACAGGCTCAGCTTGGGGGCCGCCTCGCTTGCTTAACACAGTGCATTCCTTCTGGAGGATGGTGGGTTGGTTCTGGGCCCCCCCCTCACCACTTGACCCCACTGCCTGTCAAATTTGTGGGTCCACCTATTGGCCCTGACCTTTCCCTCCCCTTCCGAACCCCTCTTTGCCCACCATTTTGGGTCCTAGGTTAGGTCTTGCTCTTGCAAACATCATTAGGGACTAAGTGTGGCCAGGGGTCCCTGTGACTCAGGGCCGGAGTGAGCTGGCAGGACTTTGGCACCCAGCCTTCCCCGTGAAGGTCACTCTTCCCGCTGGGGACCTGGGGTATGGGACGGGGTGGGGCCTATGGACAGACGCAGCAGGAGCACTCCTGCGAGCTTGGGGCCACAGTCCCTGGTGGGGCAACACTGGGAAGGAGCAGGCTGGCTTCTGGTGGTTTCACCGCCCTGTCTGGGCAGCAACTCTTGAAGAAAACTATATATATATACATACACACAGCCCTTGGAGTTTTCAAGGCAGAAGCTCTGGCCAGGCGCAGTTGCTCACACCTGTAATCTCAGCACTCAGGGAGGCCGAGCCTTGTGGATCACTTGACCCCAGGAGTTCAAGACCAGCCTGGGCAACATGGTGAAAACCCATCTCTAGGGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGAACGTTGGAAGGCCGAGGCGGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTTTACTAAAAATATGAAACAATTAGCCGGGTATGGTGGTGGGCTCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGAAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATTGGGCCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAACAAAAGCCCCATCTCTACAAACAAGTTTTTAAAAATTAGCTGGGCATGGTGGTATGTACCTGCGGTCCCAGCTATTCAGGAGGCTGAGGTGGGTGGATCACTTGAGCCTGGGTGGTTGAGGCTGCCGTAAGCCGTGATGGCACCCCTGCACTCCAGCCTGGGTGACAGAGCAGGACACTGTCTCAAAAGAAGAAAAAGAAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACCGAAAATTAGCCGAGCATGGTGGTGGGAGCCTGTAGTTCCAGCTACTCGGGAAGCCGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCGCTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAGAAAAAGAAAAAGAAAAAGGGTAGAAGCTCTGTGTCCCAAGTGGGCAAGCAGGTGCCTCATGAATTCATTTCCTCATTTAAAGTAGGTAGATTTATTCTCATTTTTTTCCAATGGGGAAATTAAGGCACAGGGTCTTAAGCGGCTTGCCCAGGACCACACAGCCAGCTGGATTCACACTCCGGGCTGTGCTATGTCTGAGCTATGTTGGATGAACCTGGGGGTCCAGTGGCTTCCTGTAGGCGTGTTCTGACTGGGGGCTTCCACACTGTAGACCCACAGCCAGTGGTCAGCCTGCTAATCATCTTGGAGAGGAACTCCTGAGCTGGTCCTTGCTCTGAGGAGAAGGCAGCCCCAGAGGCAGGCGGTGAAGACAGAGCTGAGAAAATTGACCCATCTCTGGCTGCCAGAGCCCAGGTGTAGCAGAGCTGTTGGGGATCAGTTGCCAGTGAGGGGACCCCAGACCAGACCTTATAGGAGGAATGTAGACTGCCTAACTGTGGGAGGTTCTTGGACCCCAGGGAGCTGGGATAGAGGCAGTGAATGGGCAGGAGTGGAATTGAGGGGCTATCAGGGTGCAAGTGGGATAGGGGCGCATTACCGTCTCTGCCCCTCCCTTGTTTGCGTGTGCCCACTGGGGTAGTCCCATCTGTGCGTGTGCCCACTGGGGTAGTCCCATCTGTTCCTTGTTAGGCACTCAACAGACAGGCCTCCAGGACATTAATTAATGCCAAGCTGCTGGCACAACCAGCAGCATGCCTGTCCCAGGGCCCCGTTCTGGCAGCACAGATACCCAGCTGACCCCAGAAATGCTGCTCCGTTCCCACCCGCTGATCCTGAAGACACAGGGGCCACATTGCTGGCATAACCCTGCCCCCGAGGATGGATGGCAGGGAAGGCTTAGGTGGTGGCAGGCAGCCAGAGACGGCAGCAGGATGTTCCCCCCACAGACTGGTCTCCATCACCACCCTGGACCTTCTCCTTCATCCCTGGCTCTGCCCCAGGCCTGCTGTGTGACCTTAGTCATGTAGCTTACCCTCTCTGGGCAACTTTTCTTTCTCCATCTATAAAATGAAGGGGTTAGACTGGGTCAACACTGAGCCTCCCCCTGAGTCTGAGTCTTTGTTGTCTGTAGATCTGCCTGATTTGGGGTGGCTCTGCTGGTACTCCCACTTCCTGCTCCATATCTACCTCCCCTTGGTATCCCACATTGTCTCCTGCATGTCTTGTTGCCCCAGGGCCCTGACTGGTACTCCTATAATTAACTCCTGCCCATGCTCAGGACATGGAGGGCCTGCTTGGCTTGGCCAGACCCAGTGGCCTGTTGGGGCCCGGGCCCCACCCTCACGGACTGGCCAGCGTTCCCAACCCCAGGGCCAGGGCAAGGCGTCTGCTCCCACAGTGGCTACCTCCAGCCGGCCCAGCACATTCCTCAGGCTTATCTGGAGGCCCGCCCCACTGGACTCTGCCCTCCCACCCAGGAAGCAGCACCCAGAGCTGCGTGCGGAAGAGTTGCAGGGCCTGGGAACAGGCCCTGCGTGAGCTCGAGGTAGTGATTCTTAGCCTGGGGCTGGAGAGAAACAGGTAGAGGACCGGGTGGGGCAGGAGGGTAGAGGGGTTTGTGGGGGCTGCTGAGCTGACCAGGCAAATTGTCTTTAACATTGCAGAGCATGGGGTTCACTCAGACACGCAGGGGTCATCTCCTGCGACCCTCCTCCTCCATCTCTGGGAAGCGCTTCCCTGCTACCCCTGGGAGCTCTTGTACCCAGGAAGGGGCTTTTGCTCTTGGCAAGTTGACCTAAATTTGCACCAGAGTTATCACAGTTGATGGGGCCACGATCCCAAAGTGCTGAGGGACAGCAGCTCCCTGCCACTTCCCTTCCTGGGTCCCCACCTCCACAGTAGGAGCCAGAGCCAGTCCTCCCAGGAAGGGGTTAACTGCCAGCCCCAGCCGTGAGGGAGGGGACTGGGCTGGACCATTTTCCTCACTGCCGCCTCCACCTCGGTTTTCCTGAATGGTTCTGTCGTCCTGGGGTGGGGAGGGAAGGGAAGGAAGAAGGGCGGGAGGAAGGAGGGAGGGAAGAGGGAGAGAGGAGGAGTGTGGGAAGAGGAAGGAAAAAAGAGAGCGAGACAGCGAGAGGAAGAGAAAGATGTCACTGTCTCTAATCTCCCTGTCATTTTTATTTCCAG
Seq C2 exon
CAGGCGCGGGGCGAAGGAGCTGCTAGAACAATGCTGAGGCGGGTGAGGTGAGGAGCAGCCCCTCGCGGCAGCCCCGACAGAGTGTCTGGAACAGGTGATTGGAGGAGCCGGAGACCCAGGCACCTGGGCATCCTTCCCCTCGCCTCTGCCAGGCCCCGCGCCCCTAAAAGGTGGGAAAACCATGGCGACCAATTTCAGTGACATCGTCAAGCAAGGCTACGTGAAGATGAAGAGCAGGAAGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170-DOK4:NM_018110:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0225710=RFX_DNA_binding=PU(87.5=95.5)
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)