HsaALTD1017508-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90061452-90062192:-
Coord C1 exon
chr16:90061921-90062192
Coord A exon
chr16:90061830-90061920
Coord C2 exon
chr16:90061452-90061519
Length
91 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
CCTTATTTTTTGAAACTCAGATC
3' ss Score
4.95
Exon sequences
Seq C1 exon
ATTGTGAGATGTGTCAGAACTTCTTCATTGACAGCTGTGCTGCTCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGCATCCCAACCGTTCAGCCCTCAGTCTGCCCCCGGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGGGCTTGGAGTATGGAACGAGGCATCTGATCTGCCACTGGGTCTGCACTTTGGCCCCTATGAGGGCCGAATTACAGAAGACGAAGAGGCAGCCAACAGTGGATATTCCTGGCTA
Seq A exon
GTAAGAAGAGCCTGCTGTTTCCCCTGTTCTGTCTTCCCACATCCCTTCTGTGCCTTTGATGGGACATCACCTTCTACATGTTAGGATATAG
Seq C2 exon
ATCACCAAGGGGAGAAACTGCTATGAGTATGTGGATGGAAAAGATAAATCCTCGGCCAACTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856-18-15,19-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCTTGGAGTATGGAAC
R:
CATCCAGTTGGCCGAGGATTT
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains