HsaINT1027936 @ hg38
Intron Retention
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90061452-90062325:-
Coord C1 exon
chr16:90061921-90062325
Coord A exon
chr16:90061520-90061920
Coord C2 exon
chr16:90061452-90061519
Length
401 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGA
5' ss Score
5.2
3' ss Seq
CCTTATTTTTTGAAACTCAGATC
3' ss Score
4.95
Exon sequences
Seq C1 exon
ATCATTCCCTTACTCGAATGAATTAAAGTACAGGATTGGGGCTAAATAATGTGAGTGCCACGCTCTTTCTGAAGCTCTTATATCAAGGAACATGCATTACAACTTTCCTAATCCCTGCTTCCCTCACTTCCAGATTGTGAGATGTGTCAGAACTTCTTCATTGACAGCTGTGCTGCTCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGCATCCCAACCGTTCAGCCCTCAGTCTGCCCCCGGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGGGCTTGGAGTATGGAACGAGGCATCTGATCTGCCACTGGGTCTGCACTTTGGCCCCTATGAGGGCCGAATTACAGAAGACGAAGAGGCAGCCAACAGTGGATATTCCTGGCTA
Seq A exon
GTAAGAAGAGCCTGCTGTTTCCCCTGTTCTGTCTTCCCACATCCCTTCTGTGCCTTTGATGGGACATCACCTTCTACATGTTAGGATATAGGTAGGGATAACATGGTTAGCTCTGTGTACTCAAGGGTCTTTGCATGAACATGGAACTCCTATTTAGAGATCACAGGGTACATGGGAGCAGAGTGGTACAAAGACAAAGAAGTGCATCCTCCCTTTTGGAGCTTCTGCTCTGATTGGACAAACCAACTCAGATGTGTAGATGATGACTAAGGTGCATGCCATGTGGTCTCAGTTGGCAGTTGAAGCTCTGCAGGTCCAAAGGCCATTGATGACCGTGGAGTAAAATAATTCTTCGGATTTTTACCCTCTAAAAAGTCTTTACCTTATTTTTTGAAACTCAG
Seq C2 exon
ATCACCAAGGGGAGAAACTGCTATGAGTATGTGGATGGAAAAGATAAATCCTCGGCCAACTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856:ENST00000325921:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTTCCCTCACTTCCAGA
R:
CATCCAGTTGGCCGAGGATTT
Band lengths:
358-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains