HsaALTD1018602-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000130402 | ACTN4
Description
actinin alpha 4 [Source:HGNC Symbol;Acc:HGNC:166]
Coordinates
chr19:38728371-38729154:+
Coord C1 exon
chr19:38728371-38728381
Coord A exon
chr19:38728382-38728558
Coord C2 exon
chr19:38728996-38729154
Length
177 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGG
5' ss Score
-0.14
3' ss Seq
ACCCCACCCTCTCCTTGCAGGGT
3' ss Score
12.64
Exon sequences
Seq C1 exon
GATACAGCCTG
Seq A exon
GTATGCAGCTCTGTCTCCCCAGCCACCCGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCACCTCTCCCCCTCACCGCCTCCAGAGCTTCCTCGTCCTCGGGGACACTCCTCCGCCCGAGCAGCGCAGCCGTGCCTGCCTCTTCCTCTGCTGCATCTGCCGGG
Seq C2 exon
GGTGAGGCCGAGTTCAACCGCATCATGAGCCTGGTCGACCCCAACCATAGCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCGCGGGAGACCACCGACACGGACACGGCTGACCAGGTCATCGCTTCCTTCAAGGTCTTAGCAGGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130402-97-75,98-75-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(22.3=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.7=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains