HsaALTD1018787-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000130720 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr9:130905234-130911888:-
Coord C1 exon
chr9:130911792-130911888
Coord A exon
NA
Coord C2 exon
chr9:130905234-130905413
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
CATTTTCCCCCCAACTTCAGGGC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTGTTTCAGCGCCGGGAGGACGGCTCCGTGAACTTCTTCCGGGGCTGGGATGCGTACCGAGACGGCTTTGGCAGGCTCACCGGGGAGCACTGGCTAG
Seq A exon
NA
Seq C2 exon
GGCTCAAGAGGATCCACGCCCTGACCACACAGGCTGCCTACGAGCTGCACGTGGACCTGGAGGACTTTGAGAATGGCACGGCCTATGCCCGCTACGGGAGCTTCGGCGTGGGCTTGTTCTCCGTGGACCCTGAGGAAGACGGGTACCCGCTCACCGTGGCTGACTATTCCGGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130720-17-17,18-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCAGCGCCGGGAG
R:
CTGCAGTGCCGGAATAGTCAG
Band lengths:
277-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains