HsaALTD1018787-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000130720 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr9:130905234-130911888:-
Coord C1 exon
chr9:130911792-130911888
Coord A exon
chr9:130911294-130911791
Coord C2 exon
chr9:130905234-130905413
Length
498 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CATTTTCCCCCCAACTTCAGGGC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTGTTTCAGCGCCGGGAGGACGGCTCCGTGAACTTCTTCCGGGGCTGGGATGCGTACCGAGACGGCTTTGGCAGGCTCACCGGGGAGCACTGGCTAG
Seq A exon
GTGAGCACCCCACCCACCATCCGGCCCAGGTGGGCCTCCTCCCCCTGCCTTCCGGACACAGTTGGGTCCCAGCTGCTCCCTGAATGGGTTTGGGCTGGGTTTCCCTGGCCTCGGCACACCTGAGCCAGCTCACAGGTGTCATGCATGAAGGTGACAGGCATTCAGAAGGAATGAGGCCAGACATTGCCAACGGAAGTGTCAGCGTGGGTGGGCTCCCAGTGCTCATAAAGGCTGAGGGTCCCACATGCCCTTGGAGGCCACTTCCTGCCGGGGTCACCCTGGGACCTGCTGGCTGTCCTGAATCAAGCCAGCTTGGGCAGGTGGTCAGCAGCATCCCAGGCAGCAGGAGGACAGAGGAGGACCCGGCCCCACCCTGCCCAAGGGTGCCAGGGACACCAGGCATGGAACTCCCAAGAGTGGCCAGTGGTGCTGAGTGTGTCCAGAATTGGTGGGTTCTTGGTCTCACTGATTTCAAGAATGAAGCTGCAGACCCTCGTG
Seq C2 exon
GGCTCAAGAGGATCCACGCCCTGACCACACAGGCTGCCTACGAGCTGCACGTGGACCTGGAGGACTTTGAGAATGGCACGGCCTATGCCCGCTACGGGAGCTTCGGCGTGGGCTTGTTCTCCGTGGACCCTGAGGAAGACGGGTACCCGCTCACCGTGGCTGACTATTCCGGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130720-17-17,18-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.7=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCAGCGCCGGGAG
R:
CTGCAGTGCCGGAATAGTCAG
Band lengths:
277-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains